Information for motif23


Reverse Opposite:

p-value:1e-5
log p-value:-1.213e+01
Information Content per bp:1.530
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.10%
Number of Background Sequences with motif3.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets123.0 +/- 30.1bp
Average Position of motif in Background89.7 +/- 59.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0130.1_Gm397_2/Jaspar

Match Rank:1
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-TCCGTTTGTG-----
NNGCGTGTGTGCNGCN

BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer

Match Rank:2
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--TCCGTTTGTG
BRRCVGTTDN--

MA0514.1_Sox3/Jaspar

Match Rank:3
Score:0.62
Offset:2
Orientation:forward strand
Alignment:TCCGTTTGTG--
--CCTTTGTTTT

MA0143.3_Sox2/Jaspar

Match Rank:4
Score:0.62
Offset:2
Orientation:forward strand
Alignment:TCCGTTTGTG
--CCTTTGTT

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:5
Score:0.61
Offset:2
Orientation:forward strand
Alignment:TCCGTTTGTG
--CCWTTGTY

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:6
Score:0.60
Offset:2
Orientation:forward strand
Alignment:TCCGTTTGTG--
--CCATTGTTNY

PB0166.1_Sox12_2/Jaspar

Match Rank:7
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-TCCGTTTGTG-----
ANTCCTTTGTCTNNNN

PH0126.1_Obox6/Jaspar

Match Rank:8
Score:0.58
Offset:-6
Orientation:reverse strand
Alignment:------TCCGTTTGTG
CNATAATCCGNTTNT-

MF0009.1_TRP(MYB)_class/Jaspar

Match Rank:9
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--TCCGTTTGTG
TGTCGGTT----

PB0168.1_Sox14_2/Jaspar

Match Rank:10
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-TCCGTTTGTG----
NNNCCATTGTGTNAN