Information for motif28


Reverse Opposite:

p-value:1e-3
log p-value:-6.975e+00
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.07%
Number of Background Sequences with motif3.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets89.1 +/- 59.8bp
Average Position of motif in Background147.7 +/- 29.1bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.75
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

NRF1/Promoter/Homer

Match Rank:1
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:GGCGCATGCT---
-GCGCATGCGCAC

MA0506.1_NRF1/Jaspar

Match Rank:2
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:GGCGCATGCT-
TGCGCAGGCGC

NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:GGCGCATGCT---
-GCGCATGCGCAG

PB0143.1_Klf7_2/Jaspar

Match Rank:4
Score:0.65
Offset:-6
Orientation:reverse strand
Alignment:------GGCGCATGCT-
NNNTNGGGCGTATNNTN

PB0147.1_Max_2/Jaspar

Match Rank:5
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GGCGCATGCT--
NNGTCGCGTGNCAC

MA0058.2_MAX/Jaspar

Match Rank:6
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GGCGCATGCT
AAGCACATGG-

PB0206.1_Zic2_2/Jaspar

Match Rank:7
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GGCGCATGCT------
-TCNCCTGCTGNGNNN

PB0207.1_Zic3_2/Jaspar

Match Rank:8
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:GGCGCATGCT------
-NNTCCTGCTGTGNNN

PB0009.1_E2F3_1/Jaspar

Match Rank:9
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----GGCGCATGCT
ATAAGGGCGCGCGAT

MA0464.1_Bhlhe40/Jaspar

Match Rank:10
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GGCGCATGCT-
CTCACGTGCAC