Information for motif5


Reverse Opposite:

p-value:1e-38
log p-value:-8.790e+01
Information Content per bp:1.720
Number of Target Sequences with motif142.0
Percentage of Target Sequences with motif2.32%
Number of Background Sequences with motif269.5
Percentage of Background Sequences with motif0.62%
Average Position of motif in Targets100.6 +/- 52.2bp
Average Position of motif in Background93.4 +/- 58.3bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0046.1_HNF1A/Jaspar

Match Rank:1
Score:0.87
Offset:-1
Orientation:forward strand
Alignment:-GTTAATGATT---
GGTTAATAATTAAC

MA0153.1_HNF1B/Jaspar

Match Rank:2
Score:0.80
Offset:0
Orientation:reverse strand
Alignment:GTTAATGATT--
GTTAAATATTAA

Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer

Match Rank:3
Score:0.78
Offset:-1
Orientation:forward strand
Alignment:-GTTAATGATT--
GGTTAAACATTAA

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:4
Score:0.76
Offset:0
Orientation:forward strand
Alignment:GTTAATGATT
GKTAATGR--

MF0010.1_Homeobox_class/Jaspar

Match Rank:5
Score:0.71
Offset:3
Orientation:forward strand
Alignment:GTTAATGATT
---AATAATT

PH0051.1_Hoxa4/Jaspar

Match Rank:6
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---GTTAATGATT----
CNAGTTAATTAATAANN

PH0096.1_Lhx6_1/Jaspar

Match Rank:7
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----GTTAATGATT---
GAGCGTTAATTAATGTA

PH0154.1_Prrx1/Jaspar

Match Rank:8
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----GTTAATGATT---
ANNAGTTAATTAGTTAN

PH0030.1_Esx1/Jaspar

Match Rank:9
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----GTTAATGATT---
ATCCATTAATTAATTGA

PH0151.1_Pou6f1_1/Jaspar

Match Rank:10
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---GTTAATGATT----
GACGATAATGAGCTTGC