Information for motif6


Reverse Opposite:

p-value:1e-32
log p-value:-7.545e+01
Information Content per bp:1.767
Number of Target Sequences with motif901.0
Percentage of Target Sequences with motif14.72%
Number of Background Sequences with motif4296.4
Percentage of Background Sequences with motif9.84%
Average Position of motif in Targets100.3 +/- 54.1bp
Average Position of motif in Background99.1 +/- 58.9bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:1
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-CTAWTAGT
BCMATTAG-

MA0132.1_Pdx1/Jaspar

Match Rank:2
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:CTAWTAGT
-AATTAG-

MA0125.1_Nobox/Jaspar

Match Rank:3
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--CTAWTAGT
ACCAATTA--

PH0107.1_Msx2/Jaspar

Match Rank:4
Score:0.65
Offset:-6
Orientation:forward strand
Alignment:------CTAWTAGT---
GAAGACCAATTAGCGCT

PH0089.1_Isx/Jaspar

Match Rank:5
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----CTAWTAGT---
ACTCCTAATTAGTCGT

PH0033.1_Gbx1/Jaspar

Match Rank:6
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----CTAWTAGT----
TNCACTAATTAGTNNNN

PB0135.1_Hoxa3_2/Jaspar

Match Rank:7
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----CTAWTAGT-
AAAAACCATTAAGG

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:8
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CTAWTAGT
TAATTAGN

PH0092.1_Lhx2/Jaspar

Match Rank:9
Score:0.62
Offset:-6
Orientation:reverse strand
Alignment:------CTAWTAGT---
NNNNNCTAATTAGTTTA

MA0075.1_Prrx2/Jaspar

Match Rank:10
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CTAWTAGT
-AATTA--