Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 6120)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 43673)	% of Background Sequences with Motif
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-241	-5.553e+02	0.0000	489.0	7.99%	493.5	1.13%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-178	-4.109e+02	0.0000	514.0	8.39%	775.5	1.78%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-140	-3.245e+02	0.0000	1112.0	18.16%	3515.7	8.05%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-132	-3.054e+02	0.0000	936.0	15.29%	2774.2	6.36%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-123	-2.836e+02	0.0000	846.0	13.82%	2461.2	5.64%
Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-83	-1.920e+02	0.0000	1005.0	16.41%	3781.9	8.66%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-68	-1.567e+02	0.0000	1467.0	23.96%	6707.7	15.37%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-62	-1.434e+02	0.0000	764.0	12.48%	2868.3	6.57%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-60	-1.397e+02	0.0000	587.0	9.59%	1993.5	4.57%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-56	-1.304e+02	0.0000	1253.0	20.46%	5726.1	13.12%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-52	-1.209e+02	0.0000	794.0	12.97%	3208.3	7.35%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-52	-1.205e+02	0.0000	400.0	6.53%	1210.6	2.77%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e-48	-1.123e+02	0.0000	1512.0	24.69%	7514.9	17.22%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-40	-9.357e+01	0.0000	551.0	9.00%	2132.4	4.89%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-38	-8.918e+01	0.0000	504.0	8.23%	1920.3	4.40%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-36	-8.446e+01	0.0000	737.0	12.04%	3237.2	7.42%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-36	-8.327e+01	0.0000	997.0	16.28%	4767.1	10.92%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-22	-5.113e+01	0.0000	366.0	5.98%	1509.9	3.46%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-20	-4.680e+01	0.0000	133.0	2.17%	373.8	0.86%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-19	-4.446e+01	0.0000	122.0	1.99%	336.9	0.77%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-19	-4.430e+01	0.0000	136.0	2.22%	398.5	0.91%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-18	-4.232e+01	0.0000	223.0	3.64%	829.6	1.90%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-17	-4.138e+01	0.0000	38.0	0.62%	42.1	0.10%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-16	-3.737e+01	0.0000	91.0	1.49%	235.9	0.54%
Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-15	-3.665e+01	0.0000	567.0	9.26%	2844.1	6.52%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-15	-3.661e+01	0.0000	200.0	3.27%	755.0	1.73%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-12	-2.991e+01	0.0000	885.0	14.45%	4958.2	11.36%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-12	-2.807e+01	0.0000	574.0	9.37%	3033.1	6.95%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-11	-2.756e+01	0.0000	1310.0	21.39%	7798.7	17.87%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-11	-2.637e+01	0.0000	1177.0	19.22%	6951.1	15.93%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-11	-2.635e+01	0.0000	279.0	4.56%	1289.1	2.95%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-10	-2.522e+01	0.0000	91.0	1.49%	293.0	0.67%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-9	-2.130e+01	0.0000	1041.0	17.00%	6201.6	14.21%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-8	-2.044e+01	0.0000	335.0	5.47%	1705.8	3.91%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-7	-1.775e+01	0.0000	356.0	5.81%	1881.2	4.31%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-7	-1.767e+01	0.0000	149.0	2.43%	655.6	1.50%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-7	-1.748e+01	0.0000	2416.0	39.46%	15750.7	36.09%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-7	-1.679e+01	0.0000	358.0	5.85%	1912.2	4.38%
Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-6	-1.473e+01	0.0000	85.0	1.39%	336.8	0.77%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-6	-1.449e+01	0.0000	614.0	10.03%	3601.3	8.25%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-6	-1.403e+01	0.0000	133.0	2.17%	607.4	1.39%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-5	-1.357e+01	0.0000	184.0	3.01%	910.7	2.09%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-5	-1.347e+01	0.0000	1114.0	18.19%	6964.1	15.96%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-5	-1.336e+01	0.0000	402.0	6.57%	2264.1	5.19%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-5	-1.310e+01	0.0000	124.0	2.03%	567.2	1.30%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-5	-1.289e+01	0.0000	2347.0	38.33%	15502.4	35.52%
CTCF-SatelliteElement/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-5	-1.282e+01	0.0000	27.0	0.44%	68.8	0.16%
Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-5	-1.249e+01	0.0000	130.0	2.12%	609.8	1.40%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-5	-1.196e+01	0.0000	573.0	9.36%	3410.5	7.81%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-5	-1.183e+01	0.0000	1278.0	20.87%	8151.8	18.68%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-4	-1.141e+01	0.0001	248.0	4.05%	1338.0	3.07%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-4	-1.125e+01	0.0001	136.0	2.22%	661.9	1.52%
GATA-IR3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-4	-1.122e+01	0.0001	76.0	1.24%	321.0	0.74%
SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-4	-1.099e+01	0.0001	3127.0	51.07%	21130.9	48.41%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-4	-1.094e+01	0.0001	1285.0	20.99%	8242.1	18.88%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-4	-1.043e+01	0.0001	963.0	15.73%	6073.6	13.92%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-4	-9.895e+00	0.0002	181.0	2.96%	954.1	2.19%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-4	-9.596e+00	0.0003	183.0	2.99%	972.5	2.23%
GATA:SCL/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-4	-9.394e+00	0.0003	82.0	1.34%	373.2	0.86%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-4	-9.391e+00	0.0003	646.0	10.55%	3984.8	9.13%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-3	-9.114e+00	0.0004	369.0	6.03%	2166.2	4.96%
Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-3	-9.005e+00	0.0005	194.0	3.17%	1052.1	2.41%
HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-3	-8.451e+00	0.0008	331.0	5.41%	1939.4	4.44%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-3	-8.094e+00	0.0012	456.0	7.45%	2770.9	6.35%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-3	-7.783e+00	0.0016	1480.0	24.17%	9763.5	22.37%
E-box(HLH)/Promoter/Homer	SSGGTCACGTGA	1e-3	-7.781e+00	0.0016	54.0	0.88%	234.7	0.54%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-3	-7.668e+00	0.0017	1251.0	20.43%	8186.3	18.76%
Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-3	-7.428e+00	0.0022	763.0	12.46%	4858.3	11.13%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-3	-7.356e+00	0.0023	303.0	4.95%	1790.2	4.10%
LXRE(NR/DR4)/BLRP(RAW)-LXRb-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-3	-7.281e+00	0.0024	38.0	0.62%	152.4	0.35%
TR4(NR/DR1)/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-3	-7.072e+00	0.0029	92.0	1.50%	464.0	1.06%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-2	-6.451e+00	0.0054	1358.0	22.18%	9005.2	20.63%
FXR(NR/IR1)/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e-2	-6.365e+00	0.0058	257.0	4.20%	1521.4	3.49%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-2	-6.182e+00	0.0069	59.0	0.96%	281.6	0.65%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-2	-6.142e+00	0.0071	478.0	7.81%	2994.1	6.86%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e-2	-6.074e+00	0.0074	215.0	3.51%	1257.8	2.88%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-2	-6.071e+00	0.0074	500.0	8.17%	3145.4	7.21%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-2	-5.967e+00	0.0081	223.0	3.64%	1312.4	3.01%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-2	-5.564e+00	0.0119	252.0	4.12%	1514.1	3.47%
USF1(HLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-2	-5.274e+00	0.0157	254.0	4.15%	1538.0	3.52%
RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-2	-5.200e+00	0.0168	782.0	12.77%	5110.7	11.71%
GATA-DR8(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-2	-5.055e+00	0.0191	35.0	0.57%	157.5	0.36%
PPARE(NR/DR1)/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-2	-5.001e+00	0.0199	642.0	10.49%	4163.6	9.54%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-2	-4.995e+00	0.0199	675.0	11.02%	4389.9	10.06%
Ptf1a(HLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-2	-4.987e+00	0.0199	1838.0	30.02%	12474.8	28.58%
NF1:FOXA1/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-2	-4.935e+00	0.0206	36.0	0.59%	164.1	0.38%
GATA-IR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-2	-4.862e+00	0.0219	44.0	0.72%	211.7	0.49%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-2	-4.861e+00	0.0219	731.0	11.94%	4781.1	10.95%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-2	-4.753e+00	0.0238	1069.0	17.46%	7122.3	16.32%
bZIP:IRF/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-2	-4.707e+00	0.0247	181.0	2.96%	1077.5	2.47%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e-2	-4.610e+00	0.0269	213.0	3.48%	1290.7	2.96%
E2A(HLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-1	-4.410e+00	0.0325	1077.0	17.59%	7204.6	16.51%
Pax7-long(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e-1	-4.227e+00	0.0386	11.0	0.18%	36.2	0.08%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-1	-4.224e+00	0.0386	296.0	4.83%	1857.2	4.25%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-1	-4.198e+00	0.0389	794.0	12.97%	5259.6	12.05%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-1	-4.168e+00	0.0397	301.0	4.92%	1893.5	4.34%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-1	-3.905e+00	0.0511	949.0	15.50%	6355.6	14.56%
GATA-DR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-1	-3.888e+00	0.0514	37.0	0.60%	183.8	0.42%
NFkB-p65-Rel(RHD)/LPS-exp(GSE23622)/Homer	GGAAATTCCC	1e-1	-3.880e+00	0.0514	40.0	0.65%	201.0	0.46%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-1	-3.819e+00	0.0540	413.0	6.75%	2668.4	6.11%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-1	-3.781e+00	0.0556	2086.0	34.07%	14341.0	32.86%
FOXA1:AR/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-1	-3.748e+00	0.0568	28.0	0.46%	132.5	0.30%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e-1	-3.634e+00	0.0631	444.0	7.25%	2890.9	6.62%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e-1	-3.617e+00	0.0635	432.0	7.06%	2809.0	6.44%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-1	-3.595e+00	0.0644	434.0	7.09%	2824.7	6.47%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-1	-3.530e+00	0.0680	514.0	8.39%	3376.1	7.74%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-1	-3.514e+00	0.0684	119.0	1.94%	709.2	1.62%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-1	-3.334e+00	0.0812	406.0	6.63%	2648.4	6.07%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e-1	-3.308e+00	0.0826	144.0	2.35%	880.1	2.02%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e-1	-3.249e+00	0.0868	46.0	0.75%	248.4	0.57%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-1	-3.242e+00	0.0868	137.0	2.24%	836.6	1.92%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-1	-3.205e+00	0.0891	589.0	9.62%	3915.6	8.97%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-1	-3.171e+00	0.0913	448.0	7.32%	2946.1	6.75%
BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer	NHAACBGYYV	1e-1	-3.168e+00	0.0913	891.0	14.55%	6014.1	13.78%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e-1	-3.158e+00	0.0913	1761.0	28.76%	12118.1	27.76%
bHLHE40(HLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-1	-3.148e+00	0.0913	163.0	2.66%	1012.9	2.32%
MyoD(HLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-1	-3.089e+00	0.0957	584.0	9.54%	3889.7	8.91%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-1	-3.008e+00	0.1029	741.0	12.10%	4984.6	11.42%
Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-1	-3.005e+00	0.1029	165.0	2.69%	1031.7	2.36%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-1	-2.918e+00	0.1108	122.0	1.99%	748.7	1.72%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-1	-2.868e+00	0.1155	294.0	4.80%	1910.1	4.38%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-1	-2.838e+00	0.1180	670.0	10.94%	4505.3	10.32%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-1	-2.826e+00	0.1185	603.0	9.85%	4041.5	9.26%
Reverb(NR/DR2)/BLRP(RAW)-Reverba-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-1	-2.748e+00	0.1271	80.0	1.31%	477.0	1.09%
Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-1	-2.694e+00	0.1331	857.0	14.00%	5821.9	13.34%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-1	-2.679e+00	0.1341	1301.0	21.25%	8935.9	20.47%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-1	-2.648e+00	0.1371	26.0	0.42%	135.5	0.31%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e-1	-2.546e+00	0.1495	48.0	0.78%	275.5	0.63%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e-1	-2.546e+00	0.1495	48.0	0.78%	275.5	0.63%
Egr2/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-1	-2.506e+00	0.1544	107.0	1.75%	663.8	1.52%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-1	-2.505e+00	0.1544	30.0	0.49%	162.7	0.37%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-1	-2.446e+00	0.1614	197.0	3.22%	1273.0	2.92%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-1	-2.435e+00	0.1619	1066.0	17.41%	7312.2	16.75%
HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e-1	-2.378e+00	0.1702	119.0	1.94%	748.9	1.72%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-1	-2.377e+00	0.1702	175.0	2.86%	1126.8	2.58%
ETS:E-box/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-1	-2.322e+00	0.1775	63.0	1.03%	378.7	0.87%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-2.236e+00	0.1919	741.0	12.10%	5056.8	11.59%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-2.227e+00	0.1923	1919.0	31.34%	13357.9	30.60%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-2.204e+00	0.1954	57.0	0.93%	342.2	0.78%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-2.181e+00	0.1984	88.0	1.44%	548.4	1.26%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-2.129e+00	0.2076	901.0	14.72%	6189.2	14.18%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-2.033e+00	0.2269	199.0	3.25%	1308.5	3.00%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-1.996e+00	0.2337	330.0	5.39%	2214.4	5.07%
Pax8(Paired/Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-1.922e+00	0.2498	203.0	3.32%	1342.1	3.07%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-1.879e+00	0.2593	209.0	3.41%	1386.7	3.18%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-1.855e+00	0.2636	107.0	1.75%	689.8	1.58%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-1.850e+00	0.2636	198.0	3.23%	1312.6	3.01%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-1.785e+00	0.2788	113.0	1.85%	733.6	1.68%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-1.762e+00	0.2834	789.0	12.89%	5446.7	12.48%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-1.735e+00	0.2893	148.0	2.42%	975.6	2.24%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-1.710e+00	0.2948	1329.0	21.71%	9262.3	21.22%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-1.684e+00	0.3005	1029.0	16.81%	7147.4	16.38%
CEBP(bZIP)/CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-1.649e+00	0.3092	256.0	4.18%	1727.0	3.96%
c-Myc(HLH)/LNCAP-cMyc-ChIP-Seq(unpublished)/Homer	VCCACGTG	1e0	-1.639e+00	0.3102	234.0	3.82%	1575.9	3.61%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-1.637e+00	0.3102	144.0	2.35%	953.2	2.18%
Pax7(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-1.626e+00	0.3102	28.0	0.46%	167.3	0.38%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-1.554e+00	0.3312	264.0	4.31%	1790.9	4.10%
GRE/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-1.540e+00	0.3337	131.0	2.14%	869.9	1.99%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-1.536e+00	0.3337	739.0	12.07%	5123.1	11.74%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-1.534e+00	0.3337	253.0	4.13%	1715.2	3.93%
ERE(NR/IR3)/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-1.477e+00	0.3487	149.0	2.43%	997.5	2.29%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-1.453e+00	0.3551	156.0	2.55%	1047.7	2.40%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-1.438e+00	0.3582	894.0	14.60%	6230.4	14.27%
MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-1.434e+00	0.3582	762.0	12.44%	5299.9	12.14%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-1.431e+00	0.3582	630.0	10.29%	4369.9	10.01%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-1.392e+00	0.3682	393.0	6.42%	2707.5	6.20%
CLOCK(HLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-1.385e+00	0.3686	273.0	4.46%	1867.1	4.28%
PAX5(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-1.375e+00	0.3704	209.0	3.41%	1421.7	3.26%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-1.349e+00	0.3778	502.0	8.20%	3478.5	7.97%
RBPJ:Ebox/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-1.339e+00	0.3791	199.0	3.25%	1354.3	3.10%
Max(HLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-1.304e+00	0.3904	331.0	5.41%	2281.7	5.23%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-1.300e+00	0.3904	60.0	0.98%	393.4	0.90%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-1.286e+00	0.3930	24.0	0.39%	149.8	0.34%
STAT6/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-1.275e+00	0.3952	269.0	4.39%	1849.4	4.24%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-1.263e+00	0.3976	10.0	0.16%	57.9	0.13%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-1.259e+00	0.3976	380.0	6.21%	2630.7	6.03%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-1.233e+00	0.4050	11.0	0.18%	64.9	0.15%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-1.113e+00	0.4543	1311.0	21.41%	9241.3	21.17%
TRa(NR)/C17.2-TRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-1.012e+00	0.4997	243.0	3.97%	1692.7	3.88%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-9.758e-01	0.5151	230.0	3.76%	1604.3	3.68%
HIF2a(HLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-9.656e-01	0.5175	153.0	2.50%	1062.2	2.43%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-9.595e-01	0.5178	336.0	5.49%	2355.9	5.40%
BMAL1(HLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-9.380e-01	0.5261	916.0	14.96%	6472.1	14.83%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-9.336e-01	0.5261	280.0	4.57%	1962.9	4.50%
E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-8.889e-01	0.5466	943.0	15.40%	6674.7	15.29%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-8.881e-01	0.5466	140.0	2.29%	977.2	2.24%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-8.717e-01	0.5502	331.0	5.41%	2331.3	5.34%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-8.648e-01	0.5511	109.0	1.78%	760.6	1.74%
CHR/Cell-Cycle-Exp/Homer	SRGTTTCAAA	1e0	-8.240e-01	0.5710	233.0	3.81%	1642.9	3.76%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-7.939e-01	0.5853	333.0	5.44%	2356.5	5.40%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-7.936e-01	0.5853	1011.0	16.51%	7179.3	16.45%
NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-7.753e-01	0.5901	566.0	9.24%	4016.8	9.20%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-7.548e-01	0.5992	193.0	3.15%	1366.2	3.13%
ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-7.487e-01	0.5997	1200.0	19.60%	8536.5	19.56%
NFAT:AP1/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-7.173e-01	0.6157	63.0	1.03%	445.0	1.02%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529/Homer	CYAAAAATAG	1e0	-6.861e-01	0.6320	138.0	2.25%	982.8	2.25%
E2F(E2F)/Cell-Cycle-Exp/Homer	TTSGCGCGAAAA	1e0	-6.764e-01	0.6349	21.0	0.34%	148.1	0.34%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-6.336e-01	0.6593	534.0	8.72%	3816.3	8.74%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-6.227e-01	0.6632	76.0	1.24%	545.1	1.25%
NFkB-p50,p52(RHD)/p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e0	-6.091e-01	0.6689	58.0	0.95%	417.5	0.96%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-5.671e-01	0.6941	348.0	5.68%	2500.8	5.73%
GRE(NR/IR3)/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-5.510e-01	0.7019	65.0	1.06%	472.4	1.08%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-5.283e-01	0.7145	1122.0	18.32%	8044.9	18.43%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-5.097e-01	0.7243	273.0	4.46%	1973.1	4.52%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-5.021e-01	0.7263	249.0	4.07%	1802.3	4.13%
n-Myc(HLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-5.008e-01	0.7263	331.0	5.41%	2391.9	5.48%
OCT4-SOX2-TCF-NANOG((POU/Homeobox/HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-4.500e-01	0.7578	47.0	0.77%	350.6	0.80%
c-Myc/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-4.458e-01	0.7578	233.0	3.81%	1697.3	3.89%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-4.433e-01	0.7578	695.0	11.35%	5016.1	11.49%
Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-4.229e-01	0.7674	104.0	1.70%	768.2	1.76%
PAX3:FKHR-fusion(Paired/Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-3.864e-01	0.7922	68.0	1.11%	510.1	1.17%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-3.809e-01	0.7928	168.0	2.74%	1240.0	2.84%
VDR(NR/DR3)/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-3.585e-01	0.8070	104.0	1.70%	777.7	1.78%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-3.581e-01	0.8070	124.0	2.03%	923.3	2.12%
PAX5-shortForm(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-3.231e-01	0.8283	51.0	0.83%	392.7	0.90%
PRDM1/BMI1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-2.573e-01	0.8805	252.0	4.12%	1878.8	4.30%
ISRE(IRF)/ThioMac-LPS-exp(GSE23622)/HOMER	AGTTTCASTTTC	1e0	-2.533e-01	0.8805	18.0	0.29%	150.0	0.34%
Mouse_Recombination_Hotspot/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-2.452e-01	0.8831	21.0	0.34%	174.6	0.40%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-2.223e-01	0.8994	17.0	0.28%	145.6	0.33%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-2.153e-01	0.9016	358.0	5.85%	2664.3	6.10%
ETS:RUNX/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-2.124e-01	0.9016	44.0	0.72%	354.2	0.81%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-1.964e-01	0.9105	84.0	1.37%	658.9	1.51%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-1.910e-01	0.9113	45.0	0.73%	365.1	0.84%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-1.847e-01	0.9130	71.0	1.16%	563.3	1.29%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-1.713e-01	0.9212	12.0	0.20%	110.5	0.25%
GLI3(Zf)/GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-1.604e-01	0.9272	65.0	1.06%	523.5	1.20%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e0	-1.449e-01	0.9375	296.0	4.83%	2242.3	5.14%
Srebp1a(HLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-1.432e-01	0.9375	95.0	1.55%	754.9	1.73%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-1.284e-01	0.9448	199.0	3.25%	1535.6	3.52%
Pax7-longest(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-1.221e-01	0.9466	4.0	0.07%	46.5	0.11%
Srebp2(HLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-1.065e-01	0.9574	60.0	0.98%	499.4	1.14%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-9.569e-02	0.9636	94.0	1.54%	763.7	1.75%
NRF1/Promoter/Homer	STGCGCATGCGC	1e0	-8.872e-02	0.9662	80.0	1.31%	659.8	1.51%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-8.395e-02	0.9666	41.0	0.67%	358.2	0.82%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-6.921e-02	0.9768	3.0	0.05%	42.2	0.10%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-6.339e-02	0.9783	31.0	0.51%	285.0	0.65%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-4.468e-02	0.9926	58.0	0.95%	510.7	1.17%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-4.085e-02	0.9926	25.0	0.41%	246.0	0.56%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-3.101e-02	0.9979	292.0	4.77%	2309.3	5.29%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-2.972e-02	0.9979	2461.0	40.19%	18058.7	41.37%
GFY-Staf/Promoters/Homer	RACTACAATTCCCAGAAKGC	1e0	-2.730e-02	0.9979	16.0	0.26%	175.4	0.40%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-1.707e-02	0.9993	24.0	0.39%	253.2	0.58%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-1.393e-02	0.9993	377.0	6.16%	2990.5	6.85%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-1.129e-02	0.9993	223.0	3.64%	1837.1	4.21%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-1.421e-03	1.0000	263.0	4.30%	2229.9	5.11%
T1ISRE(IRF)/Ifnb-Exp/Homer	ACTTTCGTTTCT	1e0	0.000e+00	1.0000	0.0	0.00%	29.2	0.07%