Information for motif13


Reverse Opposite:

p-value:1e-14
log p-value:-3.431e+01
Information Content per bp:1.642
Number of Target Sequences with motif293.0
Percentage of Target Sequences with motif5.08%
Number of Background Sequences with motif1364.8
Percentage of Background Sequences with motif3.11%
Average Position of motif in Targets99.3 +/- 55.4bp
Average Position of motif in Background101.8 +/- 57.9bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0166.1_Sox12_2/Jaspar

Match Rank:1
Score:0.75
Offset:-4
Orientation:forward strand
Alignment:----YGAYAAAG----
AAACAGACAAAGGAAT

MA0442.1_SOX10/Jaspar

Match Rank:2
Score:0.73
Offset:2
Orientation:reverse strand
Alignment:YGAYAAAG
--ACAAAG

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:3
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:YGAYAAAG-
-RACAAWGG

MA0143.3_Sox2/Jaspar

Match Rank:4
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:YGAYAAAG-
-AACAAAGG

MA0514.1_Sox3/Jaspar

Match Rank:5
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-YGAYAAAG-
AAAACAAAGG

Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer

Match Rank:6
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--YGAYAAAG
NBWGATAAGR

MA0515.1_Sox6/Jaspar

Match Rank:7
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-YGAYAAAG-
AAAACAATGG

GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:8
Score:0.63
Offset:0
Orientation:forward strand
Alignment:YGAYAAAG
AGATAASR

PB0071.1_Sox4_1/Jaspar

Match Rank:9
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----YGAYAAAG-----
AGAAGAACAAAGGACTA

Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer

Match Rank:10
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-YGAYAAAG-
CAGATAAGGN