Information for motif15


Reverse Opposite:

p-value:1e-12
log p-value:-2.972e+01
Information Content per bp:1.856
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif0.31%
Number of Background Sequences with motif12.1
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets102.1 +/- 54.4bp
Average Position of motif in Background98.0 +/- 66.1bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

FXR(NR/IR1)/Liver-FXR-ChIP-Seq(Chong et al.)/Homer

Match Rank:1
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:GAGGTCAGTCAC--
NAGGTCANTGACCT

MA0512.1_Rxra/Jaspar

Match Rank:2
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--GAGGTCAGTCAC
CAAAGGTCAGA---

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:3
Score:0.66
Offset:1
Orientation:forward strand
Alignment:GAGGTCAGTCAC
-AGGTCA-----

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--GAGGTCAGTCAC
CAAAGGTCAG----

MA0071.1_RORA_1/Jaspar

Match Rank:5
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---GAGGTCAGTCAC
ATCAAGGTCA-----

MA0160.1_NR4A2/Jaspar

Match Rank:6
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GAGGTCAGTCAC
AAGGTCAC----

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:7
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GAGGTCAGTCAC
CAGGTAAGTAT-

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GAGGTCAGTCAC
TCAAGGTCAN----

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GAGGTCAGTCAC
NCTGTCAATCAN

MA0141.2_Esrrb/Jaspar

Match Rank:10
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----GAGGTCAGTCAC
AGCTCAAGGTCA-----