Information for motif17


Reverse Opposite:

p-value:1e-12
log p-value:-2.888e+01
Information Content per bp:1.843
Number of Target Sequences with motif75.0
Percentage of Target Sequences with motif1.30%
Number of Background Sequences with motif217.1
Percentage of Background Sequences with motif0.49%
Average Position of motif in Targets96.4 +/- 58.1bp
Average Position of motif in Background98.2 +/- 55.9bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:1
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:CTCCATTAGC
-BCMATTAG-

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:2
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:CTCCATTAGC
--YCATTAMC

MA0132.1_Pdx1/Jaspar

Match Rank:3
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:CTCCATTAGC
---AATTAG-

PB0051.1_Osr2_1/Jaspar

Match Rank:4
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CTCCATTAGC----
ATGTACAGTAGCAAAG

PB0050.1_Osr1_1/Jaspar

Match Rank:5
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CTCCATTAGC----
ATTTACAGTAGCAAAA

PB0135.1_Hoxa3_2/Jaspar

Match Rank:6
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---CTCCATTAGC-
AAAAACCATTAAGG

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CTCCATTAGC
GGCCATTAAC

MA0158.1_HOXA5/Jaspar

Match Rank:8
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:CTCCATTAGC-
---AATTAGTG

PH0127.1_Nobox/Jaspar

Match Rank:9
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----CTCCATTAGC---
GNTNNCTAATTAGNNCG

NFY(CCAAT)/Promoter/Homer

Match Rank:10
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:CTCCATTAGC-
-CCGATTGGCT