Information for motif18


Reverse Opposite:

p-value:1e-12
log p-value:-2.858e+01
Information Content per bp:1.847
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif0.36%
Number of Background Sequences with motif19.9
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets107.6 +/- 49.0bp
Average Position of motif in Background85.2 +/- 50.9bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:1
Score:0.70
Offset:4
Orientation:forward strand
Alignment:CTCCTAATCCCT
----TAATCCCN

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:2
Score:0.69
Offset:2
Orientation:forward strand
Alignment:CTCCTAATCCCT
--GCTAATCC--

PH0137.1_Pitx1/Jaspar

Match Rank:3
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-CTCCTAATCCCT----
NTTGTTAATCCCTCTNN

PH0130.1_Otx2/Jaspar

Match Rank:4
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--CTCCTAATCCCT---
GANNATTAATCCCTNNN

PH0138.1_Pitx2/Jaspar

Match Rank:5
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--CTCCTAATCCCT---
GNNNATTAATCCCTNCN

PH0035.1_Gsc/Jaspar

Match Rank:6
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CTCCTAATCCCT---
AATCGTTAATCCCTTTA

PH0139.1_Pitx3/Jaspar

Match Rank:7
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--CTCCTAATCCCT--
GNNAGCTAATCCCCCN

MA0467.1_Crx/Jaspar

Match Rank:8
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:CTCCTAATCCCT--
---CTAATCCTCTT

PB0185.1_Tcf1_2/Jaspar

Match Rank:9
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CTCCTAATCCCT----
--NNTAATCCNGNCNN

PH0129.1_Otx1/Jaspar

Match Rank:10
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--CTCCTAATCCCT---
NNNAATTAATCCCCNCN