Information for motif21


Reverse Opposite:

p-value:1e-9
log p-value:-2.285e+01
Information Content per bp:1.889
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.12%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets96.1 +/- 52.4bp
Average Position of motif in Background171.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0128.1_Gcm1_2/Jaspar

Match Rank:1
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GGGATCCCTTAT-----
NTCNTCCCCTATNNGNN

NFkB-p50,p52(RHD)/p50-ChIP-Chip(Schreiber et al.)/Homer

Match Rank:2
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---GGGATCCCTTAT
GGGGGAATCCCC---

Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer

Match Rank:3
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:GGGATCCCTTAT---
-----NCCTTATCTG

TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer

Match Rank:4
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---GGGATCCCTTAT
CCWGGAATGY-----

MA0109.1_Hltf/Jaspar

Match Rank:5
Score:0.56
Offset:4
Orientation:forward strand
Alignment:GGGATCCCTTAT--
----AACCTTATAT

Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer

Match Rank:6
Score:0.55
Offset:5
Orientation:forward strand
Alignment:GGGATCCCTTAT---
-----NNCTTATCTN

PB0098.1_Zfp410_1/Jaspar

Match Rank:7
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---GGGATCCCTTAT--
NNNTCCATCCCATAANN

TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GGGATCCCTTAT
-GCATTCCAGN-

PH0162.1_Six2/Jaspar

Match Rank:9
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----GGGATCCCTTAT
AATGGGGTATCACGTTT

PH0163.1_Six3/Jaspar

Match Rank:10
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----GGGATCCCTTAT-
ANANGTGATACCCTATN