Information for motif23


Reverse Opposite:

p-value:1e-8
log p-value:-1.900e+01
Information Content per bp:1.706
Number of Target Sequences with motif88.0
Percentage of Target Sequences with motif1.53%
Number of Background Sequences with motif340.2
Percentage of Background Sequences with motif0.78%
Average Position of motif in Targets90.5 +/- 52.0bp
Average Position of motif in Background102.9 +/- 58.0bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:1
Score:0.66
Offset:4
Orientation:reverse strand
Alignment:CCTACCAGGCCG
----CTAGGCCT

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:CCTACCAGGCCG
----CNAGGCCT

MA0146.2_Zfx/Jaspar

Match Rank:3
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:CCTACCAGGCCG-------
-----CAGGCCNNGGCCNN

MA0092.1_Hand1::Tcfe2a/Jaspar

Match Rank:4
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CCTACCAGGCCG
-ATGCCAGACN-

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:5
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----CCTACCAGGCCG
ATTTCCCAGVAKSCY-

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:6
Score:0.53
Offset:1
Orientation:forward strand
Alignment:CCTACCAGGCCG
-TTGCCAAG---

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:7
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---CCTACCAGGCCG
NNACTTACCTN----

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:CCTACCAGGCCG
----CCAGACAG

PB0154.1_Osr1_2/Jaspar

Match Rank:9
Score:0.51
Offset:-4
Orientation:forward strand
Alignment:----CCTACCAGGCCG
ACATGCTACCTAATAC

Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:10
Score:0.51
Offset:0
Orientation:forward strand
Alignment:CCTACCAGGCCG
CACAGCAGGGGG