Information for motif25


Reverse Opposite:

p-value:1e-7
log p-value:-1.812e+01
Information Content per bp:1.970
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.12%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets84.9 +/- 69.3bp
Average Position of motif in Background127.3 +/- 70.3bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.75
Offset:-2
Orientation:reverse strand
Alignment:--GGATATCTTG
AAGGATATNTN-

PB0126.1_Gata5_2/Jaspar

Match Rank:2
Score:0.74
Offset:-4
Orientation:reverse strand
Alignment:----GGATATCTTG---
NNNCTGATATCTCNNNN

PH0161.1_Six1/Jaspar

Match Rank:3
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----GGATATCTTG---
GATGGGGTATCATTTTT

PH0166.1_Six6_2/Jaspar

Match Rank:4
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----GGATATCTTG---
AATAGGGTATCAATATT

PB0059.1_Six6_1/Jaspar

Match Rank:5
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----GGATATCTTG---
AATAGGGTATCATATAT

PB0163.1_Six6_2/Jaspar

Match Rank:6
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----GGATATCTTG---
ANNNGGATATATCCNNN

GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:7
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GGATATCTTG
YSTTATCT--

PH0162.1_Six2/Jaspar

Match Rank:8
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----GGATATCTTG---
AATGGGGTATCACGTTT

PH0163.1_Six3/Jaspar

Match Rank:9
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----GGATATCTTG---
GATAGGGTATCACTAAT

PH0165.1_Six6_1/Jaspar

Match Rank:10
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----GGATATCTTG---
AATAGGGTATCAATTAT