Information for motif26


Reverse Opposite:

p-value:1e-7
log p-value:-1.623e+01
Information Content per bp:1.530
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.14%
Number of Background Sequences with motif4.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets102.8 +/- 61.9bp
Average Position of motif in Background125.5 +/- 35.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0012.1_Cdx1/Jaspar

Match Rank:1
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----TTTAGTACCA--
NAATTTTATTACCTNN

PH0013.1_Cdx2/Jaspar

Match Rank:2
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----TTTAGTACCA--
NAATTTTATTACCNNN

PH0046.1_Hoxa10/Jaspar

Match Rank:3
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----TTTAGTACCA-
TNAATTTTATTACCTN

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:4
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--TTTAGTACCA
NTTTTATGAC--

PB0129.1_Glis2_2/Jaspar

Match Rank:5
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--TTTAGTACCA--
TCTTTANTAATANN

PH0065.1_Hoxc10/Jaspar

Match Rank:6
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----TTTAGTACCA--
ANNTTTTACGACNTNN

PH0067.1_Hoxc12/Jaspar

Match Rank:7
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----TTTAGTACCA--
GNNNTTTTACGACCTNA

PH0077.1_Hoxd12/Jaspar

Match Rank:8
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----TTTAGTACCA--
NNNATTTTACGACNNTN

PB0154.1_Osr1_2/Jaspar

Match Rank:9
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---TTTAGTACCA---
NNNTTAGGTAGCNTNT

MA0124.1_NKX3-1/Jaspar

Match Rank:10
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:TTTAGTACCA
-TAAGTAT--