Information for motif3


Reverse Opposite:

p-value:1e-118
log p-value:-2.739e+02
Information Content per bp:1.671
Number of Target Sequences with motif290.0
Percentage of Target Sequences with motif5.03%
Number of Background Sequences with motif388.4
Percentage of Background Sequences with motif0.88%
Average Position of motif in Targets95.2 +/- 47.5bp
Average Position of motif in Background96.5 +/- 59.0bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.92
Offset:-7
Orientation:forward strand
Alignment:-------GCCMCCTRSTGG-
CNNBRGCGCCCCCTGSTGGC

MA0139.1_CTCF/Jaspar

Match Rank:2
Score:0.91
Offset:-4
Orientation:reverse strand
Alignment:----GCCMCCTRSTGG---
TAGCGCCCCCTGGTGGCCA

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer

Match Rank:3
Score:0.90
Offset:-5
Orientation:forward strand
Alignment:-----GCCMCCTRSTGG---
ANAGTGCCACCTGGTGGCCA

Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:GCCMCCTRSTGG-
-CCCCCTGCTGTG

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:5
Score:0.66
Offset:0
Orientation:forward strand
Alignment:GCCMCCTRSTGG
GCCATCTGTT--

E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:6
Score:0.66
Offset:0
Orientation:forward strand
Alignment:GCCMCCTRSTGG
NNCACCTGNN--

PB0206.1_Zic2_2/Jaspar

Match Rank:7
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:GCCMCCTRSTGG----
-TCNCCTGCTGNGNNN

MA0461.1_Atoh1/Jaspar

Match Rank:8
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GCCMCCTRSTGG
GCCATCTG----

MA0522.1_Tcf3/Jaspar

Match Rank:9
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GCCMCCTRSTGG
CACAGCTGCAG-

PB0205.1_Zic1_2/Jaspar

Match Rank:10
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GCCMCCTRSTGG----
-TNTCCTGCTGTGNNG