Information for motif4


Reverse Opposite:

p-value:1e-57
log p-value:-1.330e+02
Information Content per bp:1.716
Number of Target Sequences with motif1790.0
Percentage of Target Sequences with motif31.06%
Number of Background Sequences with motif9616.4
Percentage of Background Sequences with motif21.91%
Average Position of motif in Targets99.9 +/- 54.7bp
Average Position of motif in Background100.1 +/- 59.3bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.16
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:1
Score:0.93
Offset:0
Orientation:forward strand
Alignment:CSWTTGTK
CCWTTGTY

MA0143.3_Sox2/Jaspar

Match Rank:2
Score:0.92
Offset:0
Orientation:forward strand
Alignment:CSWTTGTK
CCTTTGTT

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:3
Score:0.91
Offset:0
Orientation:forward strand
Alignment:CSWTTGTK--
CCATTGTTNY

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.90
Offset:-1
Orientation:forward strand
Alignment:-CSWTTGTK-
NCCATTGTTC

MA0077.1_SOX9/Jaspar

Match Rank:5
Score:0.88
Offset:0
Orientation:forward strand
Alignment:CSWTTGTK-
CCATTGTTC

PB0168.1_Sox14_2/Jaspar

Match Rank:6
Score:0.87
Offset:-3
Orientation:reverse strand
Alignment:---CSWTTGTK----
NNNCCATTGTGTNAN

MF0011.1_HMG_class/Jaspar

Match Rank:7
Score:0.86
Offset:2
Orientation:forward strand
Alignment:CSWTTGTK
--ATTGTT

MA0515.1_Sox6/Jaspar

Match Rank:8
Score:0.85
Offset:0
Orientation:forward strand
Alignment:CSWTTGTK--
CCATTGTTTT

MA0514.1_Sox3/Jaspar

Match Rank:9
Score:0.85
Offset:0
Orientation:forward strand
Alignment:CSWTTGTK--
CCTTTGTTTT

PB0070.1_Sox30_1/Jaspar

Match Rank:10
Score:0.84
Offset:-4
Orientation:reverse strand
Alignment:----CSWTTGTK----
ANNTCCATTGTTCNNN