Information for motif6


Reverse Opposite:

p-value:1e-49
log p-value:-1.141e+02
Information Content per bp:1.562
Number of Target Sequences with motif488.0
Percentage of Target Sequences with motif8.47%
Number of Background Sequences with motif1781.9
Percentage of Background Sequences with motif4.06%
Average Position of motif in Targets105.7 +/- 53.2bp
Average Position of motif in Background99.8 +/- 59.4bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:1
Score:0.94
Offset:1
Orientation:reverse strand
Alignment:GAGGTGTTAA-
-AGGTGTTAAT

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:2
Score:0.88
Offset:1
Orientation:forward strand
Alignment:GAGGTGTTAA
-AGGTGTCA-

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:3
Score:0.88
Offset:1
Orientation:forward strand
Alignment:GAGGTGTTAA-
-AGGTGTGAAM

PB0013.1_Eomes_1/Jaspar

Match Rank:4
Score:0.86
Offset:-3
Orientation:forward strand
Alignment:---GAGGTGTTAA----
GAAAAGGTGTGAAAATT

MA0009.1_T/Jaspar

Match Rank:5
Score:0.82
Offset:-1
Orientation:forward strand
Alignment:-GAGGTGTTAA
CTAGGTGTGAA

PB0117.1_Eomes_2/Jaspar

Match Rank:6
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---GAGGTGTTAA---
GCGGAGGTGTCGCCTC

PH0164.1_Six4/Jaspar

Match Rank:7
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---GAGGTGTTAA----
TNNNNGGTGTCATNTNT

E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:8
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--GAGGTGTTAA
NNCAGGTGNN--

PH0157.1_Rhox11_1/Jaspar

Match Rank:9
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---GAGGTGTTAA----
AAGACGCTGTAAAGCGA

PH0158.1_Rhox11_2/Jaspar

Match Rank:10
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---GAGGTGTTAA----
AGGACGCTGTAAAGGGA