Information for motif7


Reverse Opposite:

p-value:1e-19
log p-value:-4.596e+01
Information Content per bp:1.756
Number of Target Sequences with motif102.0
Percentage of Target Sequences with motif1.77%
Number of Background Sequences with motif264.1
Percentage of Background Sequences with motif0.60%
Average Position of motif in Targets107.8 +/- 52.3bp
Average Position of motif in Background95.2 +/- 58.1bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0207.1_Zic3_2/Jaspar

Match Rank:1
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-GTCACAGTGKGA--
GAGCACAGCAGGACA

PB0205.1_Zic1_2/Jaspar

Match Rank:2
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GTCACAGTGKGA--
CCACACAGCAGGAGA

PB0132.1_Hbp1_2/Jaspar

Match Rank:3
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--GTCACAGTGKGA---
NNTNNACAATGGGANNN

PB0206.1_Zic2_2/Jaspar

Match Rank:4
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GTCACAGTGKGA--
CCACACAGCAGGAGA

MA0442.1_SOX10/Jaspar

Match Rank:5
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:GTCACAGTGKGA
---ACAAAG---

PB0195.1_Zbtb3_2/Jaspar

Match Rank:6
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GTCACAGTGKGA----
CAATCACTGGCAGAAT

Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.57
Offset:2
Orientation:forward strand
Alignment:GTCACAGTGKGA--
--CACAGCAGGGGG

POL009.1_DCE_S_II/Jaspar

Match Rank:8
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:GTCACAGTGKGA
--CACAGN----

MA0078.1_Sox17/Jaspar

Match Rank:9
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:GTCACAGTGKGA
--GACAATGNN-

PB0114.1_Egr1_2/Jaspar

Match Rank:10
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GTCACAGTGKGA----
TGCGGAGTGGGACTGG