Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 5762)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 43867)	% of Background Sequences with Motif
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-156	-3.602e+02	0.0000	1259.0	21.85%	4342.8	9.90%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-147	-3.387e+02	0.0000	1065.0	18.48%	3451.7	7.87%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-115	-2.663e+02	0.0000	284.0	4.93%	383.4	0.87%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-115	-2.661e+02	0.0000	1395.0	24.21%	5725.3	13.05%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-114	-2.644e+02	0.0000	1057.0	18.34%	3834.1	8.74%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-112	-2.593e+02	0.0000	729.0	12.65%	2187.0	4.98%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-110	-2.552e+02	0.0000	784.0	13.60%	2474.0	5.64%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-110	-2.551e+02	0.0000	334.0	5.80%	560.0	1.28%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-105	-2.437e+02	0.0000	882.0	15.30%	3033.7	6.91%
Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-97	-2.255e+02	0.0000	1078.0	18.71%	4212.2	9.60%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-62	-1.448e+02	0.0000	1258.0	21.83%	6002.4	13.68%
Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-62	-1.442e+02	0.0000	664.0	11.52%	2513.4	5.73%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-55	-1.287e+02	0.0000	1783.0	30.94%	9631.8	21.95%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-55	-1.280e+02	0.0000	1770.0	30.71%	9553.6	21.77%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-54	-1.265e+02	0.0000	853.0	14.80%	3728.9	8.50%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-50	-1.152e+02	0.0000	1667.0	28.93%	9046.3	20.61%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-47	-1.085e+02	0.0000	1352.0	23.46%	7051.8	16.07%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-47	-1.085e+02	0.0000	432.0	7.50%	1526.1	3.48%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e-39	-9.100e+01	0.0000	1439.0	24.97%	7887.8	17.97%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-38	-8.784e+01	0.0000	733.0	12.72%	3402.4	7.75%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-32	-7.492e+01	0.0000	2662.0	46.19%	16870.6	38.44%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-32	-7.388e+01	0.0000	1144.0	19.85%	6198.6	14.12%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-29	-6.898e+01	0.0000	2284.0	39.63%	14237.3	32.44%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-25	-5.760e+01	0.0000	1343.0	23.30%	7833.4	17.85%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-24	-5.639e+01	0.0000	2657.0	46.10%	17294.9	39.41%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-20	-4.737e+01	0.0000	801.0	13.90%	4382.3	9.99%
Ptf1a(HLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-14	-3.437e+01	0.0000	1795.0	31.15%	11611.5	26.46%
E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-13	-3.155e+01	0.0000	1028.0	17.84%	6248.8	14.24%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-13	-3.059e+01	0.0000	228.0	3.96%	1022.6	2.33%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-13	-3.005e+01	0.0000	414.0	7.18%	2168.3	4.94%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-12	-2.788e+01	0.0000	528.0	9.16%	2943.8	6.71%
E2A(HLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-11	-2.754e+01	0.0000	1042.0	18.08%	6452.6	14.70%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-11	-2.732e+01	0.0000	88.0	1.53%	286.1	0.65%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-11	-2.607e+01	0.0000	106.0	1.84%	384.2	0.88%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-11	-2.596e+01	0.0000	162.0	2.81%	689.3	1.57%
SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-9	-2.239e+01	0.0000	2920.0	50.67%	20425.0	46.54%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-9	-2.153e+01	0.0000	194.0	3.37%	923.5	2.10%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-8	-2.068e+01	0.0000	362.0	6.28%	1993.3	4.54%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-8	-2.034e+01	0.0000	317.0	5.50%	1708.5	3.89%
MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-8	-1.945e+01	0.0000	762.0	13.22%	4730.5	10.78%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-8	-1.931e+01	0.0000	86.0	1.49%	327.0	0.75%
Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-8	-1.921e+01	0.0000	710.0	12.32%	4377.0	9.97%
GATA:SCL/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-8	-1.860e+01	0.0000	103.0	1.79%	425.5	0.97%
NF1:FOXA1/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-7	-1.668e+01	0.0000	48.0	0.83%	151.8	0.35%
Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-7	-1.643e+01	0.0000	840.0	14.58%	5373.0	12.24%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-6	-1.556e+01	0.0000	541.0	9.39%	3312.1	7.55%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-6	-1.522e+01	0.0000	682.0	11.83%	4301.8	9.80%
Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-6	-1.450e+01	0.0000	239.0	4.15%	1309.9	2.98%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-6	-1.406e+01	0.0000	293.0	5.08%	1671.2	3.81%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-6	-1.393e+01	0.0000	1201.0	20.84%	8056.3	18.36%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-6	-1.383e+01	0.0000	782.0	13.57%	5053.4	11.51%
Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-5	-1.290e+01	0.0000	94.0	1.63%	429.3	0.98%
Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-5	-1.287e+01	0.0000	144.0	2.50%	732.3	1.67%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-5	-1.191e+01	0.0000	66.0	1.15%	278.3	0.63%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-5	-1.181e+01	0.0000	243.0	4.22%	1388.7	3.16%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-4	-1.139e+01	0.0000	547.0	9.49%	3482.3	7.93%
CTCF-SatelliteElement/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-4	-1.119e+01	0.0001	20.0	0.35%	49.8	0.11%
Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-4	-1.112e+01	0.0001	145.0	2.52%	765.2	1.74%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-4	-1.089e+01	0.0001	836.0	14.51%	5555.8	12.66%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-4	-1.067e+01	0.0001	403.0	6.99%	2502.2	5.70%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-4	-9.848e+00	0.0002	349.0	6.06%	2154.2	4.91%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-4	-9.467e+00	0.0003	379.0	6.58%	2373.2	5.41%
GATA-IR3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-4	-9.343e+00	0.0003	90.0	1.56%	448.1	1.02%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-4	-9.238e+00	0.0004	687.0	11.92%	4558.5	10.39%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-3	-9.071e+00	0.0004	208.0	3.61%	1216.0	2.77%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-3	-9.047e+00	0.0004	296.0	5.14%	1813.3	4.13%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-3	-9.046e+00	0.0004	82.0	1.42%	403.9	0.92%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-3	-8.907e+00	0.0005	479.0	8.31%	3092.4	7.05%
GATA-IR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-3	-8.420e+00	0.0008	55.0	0.95%	249.2	0.57%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-3	-8.394e+00	0.0008	868.0	15.06%	5904.2	13.45%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-3	-8.348e+00	0.0008	146.0	2.53%	821.4	1.87%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-3	-8.249e+00	0.0009	479.0	8.31%	3117.2	7.10%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-3	-8.167e+00	0.0010	238.0	4.13%	1441.3	3.28%
Pax7(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e-3	-8.166e+00	0.0010	53.0	0.92%	240.8	0.55%
GATA-DR8(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-3	-7.849e+00	0.0013	49.0	0.85%	221.0	0.50%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-3	-7.458e+00	0.0019	1023.0	17.75%	7087.1	16.15%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-3	-7.033e+00	0.0028	148.0	2.57%	862.3	1.96%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e-2	-6.859e+00	0.0033	208.0	3.61%	1272.1	2.90%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-2	-6.709e+00	0.0038	330.0	5.73%	2124.8	4.84%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-2	-6.678e+00	0.0039	259.0	4.49%	1629.1	3.71%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-2	-6.644e+00	0.0040	190.0	3.30%	1155.2	2.63%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-2	-6.617e+00	0.0040	419.0	7.27%	2757.3	6.28%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-2	-6.223e+00	0.0059	627.0	10.88%	4270.8	9.73%
Pax7-long(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e-2	-6.087e+00	0.0067	17.0	0.29%	58.5	0.13%
MyoD(HLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-2	-6.043e+00	0.0069	514.0	8.92%	3463.7	7.89%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-2	-5.982e+00	0.0072	11.0	0.19%	30.2	0.07%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-2	-5.811e+00	0.0085	133.0	2.31%	790.8	1.80%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-2	-5.206e+00	0.0153	129.0	2.24%	779.0	1.77%
TR4(NR/DR1)/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-2	-5.159e+00	0.0159	79.0	1.37%	445.5	1.02%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-2	-5.138e+00	0.0160	464.0	8.05%	3148.2	7.17%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-2	-4.980e+00	0.0186	625.0	10.85%	4326.8	9.86%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-2	-4.931e+00	0.0193	868.0	15.06%	6112.3	13.93%
OCT4-SOX2-TCF-NANOG((POU/Homeobox/HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-2	-4.904e+00	0.0196	79.0	1.37%	450.5	1.03%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-2	-4.869e+00	0.0201	215.0	3.73%	1383.8	3.15%
NFkB-p65-Rel(RHD)/LPS-exp(GSE23622)/Homer	GGAAATTCCC	1e-2	-4.799e+00	0.0213	37.0	0.64%	183.0	0.42%
RBPJ:Ebox/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-2	-4.754e+00	0.0221	190.0	3.30%	1212.4	2.76%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-1	-4.398e+00	0.0312	1350.0	23.43%	9734.7	22.18%
PAX3:FKHR-fusion(Paired/Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-1	-4.355e+00	0.0322	95.0	1.65%	569.8	1.30%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-1	-4.261e+00	0.0351	607.0	10.53%	4240.5	9.66%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-1	-4.259e+00	0.0351	1258.0	21.83%	9060.7	20.65%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-1	-4.176e+00	0.0374	546.0	9.47%	3799.6	8.66%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-1	-4.056e+00	0.0418	162.0	2.81%	1040.0	2.37%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-1	-4.048e+00	0.0418	339.0	5.88%	2302.6	5.25%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e-1	-4.020e+00	0.0425	431.0	7.48%	2970.4	6.77%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-1	-3.856e+00	0.0495	161.0	2.79%	1040.8	2.37%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-1	-3.667e+00	0.0593	410.0	7.11%	2838.7	6.47%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-1	-3.644e+00	0.0601	136.0	2.36%	872.9	1.99%
RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-1	-3.624e+00	0.0607	655.0	11.37%	4638.4	10.57%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-1	-3.488e+00	0.0690	69.0	1.20%	414.7	0.94%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-1	-3.312e+00	0.0815	753.0	13.07%	5388.4	12.28%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-1	-3.138e+00	0.0961	99.0	1.72%	630.7	1.44%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-1	-3.029e+00	0.1062	270.0	4.69%	1857.8	4.23%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-1	-3.002e+00	0.1081	752.0	13.05%	5408.4	12.32%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-1	-2.991e+00	0.1084	400.0	6.94%	2808.5	6.40%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-1	-2.888e+00	0.1192	118.0	2.05%	772.5	1.76%
PPARE(NR/DR1)/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-1	-2.598e+00	0.1578	541.0	9.39%	3879.0	8.84%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e-1	-2.558e+00	0.1628	146.0	2.53%	985.3	2.25%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-1	-2.534e+00	0.1654	357.0	6.19%	2524.1	5.75%
USF1(HLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-1	-2.431e+00	0.1819	186.0	3.23%	1280.8	2.92%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-1	-2.413e+00	0.1835	896.0	15.55%	6543.0	14.91%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-1	-2.331e+00	0.1976	98.0	1.70%	651.3	1.48%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-1	-2.312e+00	0.1998	100.0	1.74%	666.3	1.52%
BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer	NHAACBGYYV	1e0	-2.282e+00	0.2042	863.0	14.97%	6310.1	14.38%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-2.245e+00	0.2101	277.0	4.81%	1956.6	4.46%
CEBP(bZIP)/CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-2.244e+00	0.2101	291.0	5.05%	2059.0	4.69%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-2.192e+00	0.2180	408.0	7.08%	2927.2	6.67%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-2.188e+00	0.2180	106.0	1.84%	714.7	1.63%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-2.102e+00	0.2349	465.0	8.07%	3358.7	7.65%
HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-2.094e+00	0.2350	95.0	1.65%	639.6	1.46%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-2.056e+00	0.2423	690.0	11.97%	5041.4	11.49%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-2.041e+00	0.2439	276.0	4.79%	1963.7	4.47%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-1.968e+00	0.2605	112.0	1.94%	767.3	1.75%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-1.917e+00	0.2721	574.0	9.96%	4189.2	9.55%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-1.837e+00	0.2923	614.0	10.65%	4497.3	10.25%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-1.805e+00	0.2997	922.0	16.00%	6813.6	15.53%
E-box(HLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-1.761e+00	0.3109	30.0	0.52%	189.8	0.43%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-1.714e+00	0.3236	206.0	3.57%	1470.6	3.35%
HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-1.707e+00	0.3236	255.0	4.42%	1833.6	4.18%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-1.519e+00	0.3876	1259.0	21.85%	9400.8	21.42%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-1.494e+00	0.3944	300.0	5.21%	2186.9	4.98%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-1.476e+00	0.3987	1235.0	21.43%	9226.4	21.02%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-1.465e+00	0.4001	44.0	0.76%	297.1	0.68%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-1.448e+00	0.4042	35.0	0.61%	233.5	0.53%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-1.398e+00	0.4222	84.0	1.46%	591.5	1.35%
c-Myc(HLH)/LNCAP-cMyc-ChIP-Seq(unpublished)/Homer	VCCACGTG	1e0	-1.391e+00	0.4222	161.0	2.79%	1160.5	2.64%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-1.306e+00	0.4566	222.0	3.85%	1621.5	3.69%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-1.271e+00	0.4694	318.0	5.52%	2343.0	5.34%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-1.259e+00	0.4721	269.0	4.67%	1977.2	4.51%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-1.243e+00	0.4762	1726.0	29.95%	12993.3	29.61%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-1.238e+00	0.4762	186.0	3.23%	1358.3	3.09%
GATA-DR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-1.229e+00	0.4765	41.0	0.71%	284.9	0.65%
Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-1.183e+00	0.4957	122.0	2.12%	885.2	2.02%
Reverb(NR/DR2)/BLRP(RAW)-Reverba-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-1.164e+00	0.5021	67.0	1.16%	478.2	1.09%
bHLHE40(HLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-1.162e+00	0.5021	112.0	1.94%	812.3	1.85%
bZIP:IRF/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-1.080e+00	0.5392	178.0	3.09%	1313.0	2.99%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-1.054e+00	0.5496	193.0	3.35%	1427.9	3.25%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-1.037e+00	0.5556	182.0	3.16%	1347.0	3.07%
STAT6/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-1.030e+00	0.5558	270.0	4.69%	2009.0	4.58%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-9.830e-01	0.5789	47.0	0.82%	339.9	0.77%
FOXA1:AR/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-9.659e-01	0.5852	26.0	0.45%	184.9	0.42%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-9.208e-01	0.6084	887.0	15.39%	6698.6	15.26%
PAX5-shortForm(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-9.056e-01	0.6139	45.0	0.78%	328.9	0.75%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-8.493e-01	0.6455	150.0	2.60%	1123.6	2.56%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-8.164e-01	0.6630	344.0	5.97%	2597.3	5.92%
NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-8.134e-01	0.6630	482.0	8.36%	3645.7	8.31%
c-Myc/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-8.041e-01	0.6631	194.0	3.37%	1461.2	3.33%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-7.996e-01	0.6631	1001.0	17.37%	7592.2	17.30%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-7.850e-01	0.6679	69.0	1.20%	516.1	1.18%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-7.744e-01	0.6710	171.0	2.97%	1291.0	2.94%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-7.442e-01	0.6875	257.0	4.46%	1947.4	4.44%
Egr2/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-7.284e-01	0.6944	62.0	1.08%	467.3	1.06%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-7.200e-01	0.6962	76.0	1.32%	574.8	1.31%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-6.640e-01	0.7320	34.0	0.59%	258.6	0.59%
PRDM1/BMI1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-6.623e-01	0.7320	260.0	4.51%	1983.0	4.52%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-6.540e-01	0.7320	370.0	6.42%	2823.0	6.43%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e0	-6.404e-01	0.7367	38.0	0.66%	291.0	0.66%
T1ISRE(IRF)/Ifnb-Exp/Homer	ACTTTCGTTTCT	1e0	-6.265e-01	0.7428	5.0	0.09%	37.2	0.08%
PAX5(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-5.965e-01	0.7612	157.0	2.72%	1205.2	2.75%
Srebp2(HLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-5.915e-01	0.7612	67.0	1.16%	516.5	1.18%
TRa(NR)/C17.2-TRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-5.859e-01	0.7612	210.0	3.64%	1612.6	3.67%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-5.615e-01	0.7752	954.0	16.55%	7300.2	16.63%
GLI3(Zf)/GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-5.410e-01	0.7869	55.0	0.95%	428.1	0.98%
n-Myc(HLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-5.367e-01	0.7869	266.0	4.62%	2049.1	4.67%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-5.227e-01	0.7927	19.0	0.33%	150.3	0.34%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-5.113e-01	0.7975	1051.0	18.24%	8057.5	18.36%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-4.810e-01	0.8175	485.0	8.42%	3739.6	8.52%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-4.567e-01	0.8332	698.0	12.11%	5377.2	12.25%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e0	-4.543e-01	0.8332	370.0	6.42%	2864.6	6.53%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-4.448e-01	0.8343	147.0	2.55%	1150.4	2.62%
VDR(NR/DR3)/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-4.209e-01	0.8500	90.0	1.56%	712.4	1.62%
FXR(NR/IR1)/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e0	-4.127e-01	0.8525	189.0	3.28%	1480.8	3.37%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-4.111e-01	0.8525	1611.0	27.95%	12375.0	28.20%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-4.004e-01	0.8541	23.0	0.40%	189.7	0.43%
NFkB-p50,p52(RHD)/p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e0	-3.969e-01	0.8541	39.0	0.68%	317.0	0.72%
CHR/Cell-Cycle-Exp/Homer	SRGTTTCAAA	1e0	-3.754e-01	0.8667	261.0	4.53%	2044.2	4.66%
Pax7-longest(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-3.513e-01	0.8833	7.0	0.12%	62.8	0.14%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-3.466e-01	0.8833	22.0	0.38%	185.5	0.42%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-3.400e-01	0.8843	87.0	1.51%	700.1	1.60%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529/Homer	CYAAAAATAG	1e0	-3.285e-01	0.8901	155.0	2.69%	1233.9	2.81%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-3.282e-01	0.8901	169.0	2.93%	1342.3	3.06%
CLOCK(HLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-3.134e-01	0.8946	206.0	3.57%	1633.2	3.72%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-3.100e-01	0.8946	192.0	3.33%	1525.1	3.48%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-3.043e-01	0.8946	262.0	4.55%	2070.2	4.72%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-2.888e-01	0.9034	251.0	4.36%	1989.7	4.53%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-2.886e-01	0.9034	105.0	1.82%	850.1	1.94%
ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-2.843e-01	0.9034	927.0	16.09%	7202.1	16.41%
Max(HLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-2.735e-01	0.9040	253.0	4.39%	2009.4	4.58%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-2.613e-01	0.9108	137.0	2.38%	1107.7	2.52%
Srebp1a(HLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-2.572e-01	0.9108	98.0	1.70%	801.3	1.83%
ETS:E-box/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-2.540e-01	0.9108	46.0	0.80%	388.3	0.88%
E2F(E2F)/Cell-Cycle-Exp/Homer	TTSGCGCGAAAA	1e0	-2.467e-01	0.9110	13.0	0.23%	119.3	0.27%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-2.431e-01	0.9110	236.0	4.10%	1886.1	4.30%
LXRE(NR/DR4)/BLRP(RAW)-LXRb-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-1.961e-01	0.9492	20.0	0.35%	183.5	0.42%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e0	-1.818e-01	0.9584	240.0	4.16%	1939.7	4.42%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-1.799e-01	0.9584	5.0	0.09%	54.8	0.12%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-1.750e-01	0.9584	32.0	0.56%	286.2	0.65%
HIF2a(HLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-1.576e-01	0.9684	115.0	2.00%	961.2	2.19%
ERE(NR/IR3)/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-1.258e-01	0.9951	109.0	1.89%	924.7	2.11%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-1.212e-01	0.9951	638.0	11.07%	5077.8	11.57%
GRE/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-1.186e-01	0.9951	96.0	1.67%	822.8	1.87%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-1.009e-01	1.0000	106.0	1.84%	910.9	2.08%
NRF1/Promoter/Homer	STGCGCATGCGC	1e0	-8.646e-02	1.0000	47.0	0.82%	433.0	0.99%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-8.106e-02	1.0000	350.0	6.07%	2863.6	6.52%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-7.288e-02	1.0000	31.0	0.54%	301.8	0.69%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-7.288e-02	1.0000	31.0	0.54%	301.8	0.69%
NFAT:AP1/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-6.159e-02	1.0000	56.0	0.97%	518.3	1.18%
Pax8(Paired/Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-5.922e-02	1.0000	134.0	2.33%	1161.5	2.65%
Mouse_Recombination_Hotspot/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-4.452e-02	1.0000	23.0	0.40%	242.4	0.55%
GRE(NR/IR3)/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-4.201e-02	1.0000	47.0	0.82%	454.0	1.03%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-3.052e-02	1.0000	19.0	0.33%	213.2	0.49%
ETS:RUNX/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-2.759e-02	1.0000	28.0	0.49%	297.5	0.68%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-2.624e-02	1.0000	46.0	0.80%	457.9	1.04%
GFY-Staf/Promoters/Homer	RACTACAATTCCCAGAAKGC	1e0	-2.031e-02	1.0000	9.0	0.16%	123.7	0.28%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-1.559e-02	1.0000	61.0	1.06%	601.7	1.37%
ISRE(IRF)/ThioMac-LPS-exp(GSE23622)/HOMER	AGTTTCASTTTC	1e0	-1.346e-02	1.0000	15.0	0.26%	189.9	0.43%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-1.302e-02	1.0000	9.0	0.16%	129.5	0.30%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-1.242e-02	1.0000	248.0	4.30%	2161.3	4.92%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-8.485e-03	1.0000	2.0	0.03%	52.5	0.12%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-2.138e-03	1.0000	2215.0	38.43%	17672.3	40.27%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-1.633e-03	1.0000	27.0	0.47%	341.9	0.78%
BMAL1(HLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-9.620e-04	1.0000	742.0	12.88%	6266.1	14.28%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-3.970e-04	1.0000	2.0	0.03%	78.2	0.18%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-5.100e-05	1.0000	75.0	1.30%	861.2	1.96%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-1.000e-06	1.0000	350.0	6.07%	3382.2	7.71%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-0.000e+00	1.0000	185.0	3.21%	2025.9	4.62%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	0.000e+00	1.0000	0.0	0.00%	32.8	0.07%