Information for motif6


Reverse Opposite:

p-value:1e-30
log p-value:-7.130e+01
Information Content per bp:1.842
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif0.21%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets95.9 +/- 49.3bp
Average Position of motif in Background114.9 +/- 45.2bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0087.1_Sox5/Jaspar

Match Rank:1
Score:0.73
Offset:1
Orientation:forward strand
Alignment:GATTGTTGGGTC
-ATTGTTA----

MF0011.1_HMG_class/Jaspar

Match Rank:2
Score:0.70
Offset:1
Orientation:forward strand
Alignment:GATTGTTGGGTC
-ATTGTT-----

MA0041.1_Foxd3/Jaspar

Match Rank:3
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GATTGTTGGGTC
GAATGTTTGTTT

PH0134.1_Pbx1/Jaspar

Match Rank:4
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----GATTGTTGGGTC-
NNNNNATTGATGNGTGN

PB0070.1_Sox30_1/Jaspar

Match Rank:5
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----GATTGTTGGGTC
ANNTCCATTGTTCNNN-

PB0183.1_Sry_2/Jaspar

Match Rank:6
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----GATTGTTGGGTC-
CNNNTATTGTTCNNNNN

MA0077.1_SOX9/Jaspar

Match Rank:7
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GATTGTTGGGTC
CCATTGTTC----

PB0121.1_Foxj3_2/Jaspar

Match Rank:8
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--GATTGTTGGGTC---
NNCTTTGTTTTGNTNNN

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:9
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GATTGTTGGGTC
CCATTGTTNY---

MA0070.1_PBX1/Jaspar

Match Rank:10
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---GATTGTTGGGTC
TTTGATTGATGN---