Information for motif21


Reverse Opposite:

p-value:1e-12
log p-value:-2.861e+01
Information Content per bp:1.791
Number of Target Sequences with motif507.0
Percentage of Target Sequences with motif5.29%
Number of Background Sequences with motif1533.2
Percentage of Background Sequences with motif3.81%
Average Position of motif in Targets99.8 +/- 55.0bp
Average Position of motif in Background99.0 +/- 60.9bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0063.1_Nkx2-5/Jaspar

Match Rank:1
Score:0.86
Offset:1
Orientation:forward strand
Alignment:GTTAATTG
-TTAATTG

PH0041.1_Hmx1/Jaspar

Match Rank:2
Score:0.84
Offset:-4
Orientation:reverse strand
Alignment:----GTTAATTG-----
ANNCATTAATTGCTNGN

PH0006.1_Barhl2/Jaspar

Match Rank:3
Score:0.83
Offset:-2
Orientation:reverse strand
Alignment:--GTTAATTG------
NNNTTAATTGGTTTTT

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:4
Score:0.82
Offset:1
Orientation:forward strand
Alignment:GTTAATTG-
-CTAATKGV

PH0042.1_Hmx2/Jaspar

Match Rank:5
Score:0.81
Offset:-4
Orientation:reverse strand
Alignment:----GTTAATTG-----
ATTCNTTAATTGCTTGT

PH0043.1_Hmx3/Jaspar

Match Rank:6
Score:0.81
Offset:-4
Orientation:reverse strand
Alignment:----GTTAATTG-----
ATTNNTTAATTGCTTGT

MA0125.1_Nobox/Jaspar

Match Rank:7
Score:0.81
Offset:2
Orientation:forward strand
Alignment:GTTAATTG--
--TAATTGGT

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:8
Score:0.79
Offset:0
Orientation:forward strand
Alignment:GTTAATTG
GKTAATGR

PH0063.1_Hoxb8/Jaspar

Match Rank:9
Score:0.79
Offset:-3
Orientation:reverse strand
Alignment:---GTTAATTG-----
TTTATTAATTGCNNGN

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:10
Score:0.79
Offset:0
Orientation:reverse strand
Alignment:GTTAATTG--
GTTAATGGCC