Information for motif9


Reverse Opposite:

p-value:1e-26
log p-value:-6.145e+01
Information Content per bp:1.958
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif0.22%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets101.5 +/- 54.9bp
Average Position of motif in Background137.2 +/- 20.0bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0040.1_Hmbox1/Jaspar

Match Rank:1
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--GATTGACTAG-----
GANGTTAACTAGTTTNN

PH0168.1_Hnf1b/Jaspar

Match Rank:2
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---GATTGACTAG----
AGCTGTTAACTAGCCGT

Pax7(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:3
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GATTGACTAG
TAATTGATTA-

POL004.1_CCAAT-box/Jaspar

Match Rank:4
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GATTGACTAG-
TGATTGGCTANN

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GATTGACTAG
NTGATTGACAGN

PH0123.1_Obox3/Jaspar

Match Rank:6
Score:0.60
Offset:-7
Orientation:forward strand
Alignment:-------GATTGACTAG
TGAGGGGGATTAACTAT

PH0026.1_Duxbl/Jaspar

Match Rank:7
Score:0.60
Offset:-7
Orientation:reverse strand
Alignment:-------GATTGACTAG
NNNNGTTGATTGGGTCG

MA0070.1_PBX1/Jaspar

Match Rank:8
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---GATTGACTAG
TTTGATTGATGN-

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer

Match Rank:9
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--GATTGACTAG
ATGATKGATGRC

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:10
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GATTGACTAG
TGATTGATGA-