Information for motif19


Reverse Opposite:

p-value:1e-58
log p-value:-1.336e+02
Information Content per bp:1.741
Number of Target Sequences with motif46.0
Percentage of Target Sequences with motif0.17%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets120.3 +/- 69.5bp
Average Position of motif in Background36.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-3.3
Multiplicity (# of sites on avg that occur together)3.15
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0038.1_Gfi1/Jaspar

Match Rank:1
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-AGYGATTTTCTG
CNGTGATTTN---

NFkB-p65-Rel(RHD)/LPS-exp(GSE23622)/Homer

Match Rank:2
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:AGYGATTTTCTG
-GGGAATTTCC-

MA0107.1_RELA/Jaspar

Match Rank:3
Score:0.62
Offset:1
Orientation:forward strand
Alignment:AGYGATTTTCTG
-GGGAATTTCC-

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:4
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--AGYGATTTTCTG
GCAGTGATTT----

MA0483.1_Gfi1b/Jaspar

Match Rank:5
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---AGYGATTTTCTG
TGCTGTGATTT----

MF0003.1_REL_class/Jaspar

Match Rank:6
Score:0.59
Offset:1
Orientation:forward strand
Alignment:AGYGATTTTCTG
-GGGGATTTCC-

MA0105.3_NFKB1/Jaspar

Match Rank:7
Score:0.58
Offset:1
Orientation:forward strand
Alignment:AGYGATTTTCTG
-GGGAATTTCCC

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:8
Score:0.57
Offset:4
Orientation:forward strand
Alignment:AGYGATTTTCTG--
----ATTTCCTGTN

MA0156.1_FEV/Jaspar

Match Rank:9
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:AGYGATTTTCTG
----ATTTCCTG

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:10
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:AGYGATTTTCTG--
----NTTTTATGAC