Information for motif38


Reverse Opposite:

p-value:1e-5
log p-value:-1.290e+01
Information Content per bp:1.530
Number of Target Sequences with motif150.0
Percentage of Target Sequences with motif1.05%
Number of Background Sequences with motif249.9
Percentage of Background Sequences with motif0.71%
Average Position of motif in Targets102.5 +/- 55.2bp
Average Position of motif in Background98.9 +/- 57.6bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0526.1_USF2/Jaspar

Match Rank:1
Score:0.92
Offset:-1
Orientation:reverse strand
Alignment:-GTCACATG--
GGTCACATGAC

MA0093.2_USF1/Jaspar

Match Rank:2
Score:0.89
Offset:-1
Orientation:reverse strand
Alignment:-GTCACATG--
GGTCACGTGGC

Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer

Match Rank:3
Score:0.84
Offset:0
Orientation:forward strand
Alignment:GTCACATG--
GTCACGTGGT

NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer

Match Rank:4
Score:0.81
Offset:0
Orientation:reverse strand
Alignment:GTCACATG--
GTCACGTGGM

E-box(HLH)/Promoter/Homer

Match Rank:5
Score:0.79
Offset:-3
Orientation:forward strand
Alignment:---GTCACATG-
CCGGTCACGTGA

MA0058.2_MAX/Jaspar

Match Rank:6
Score:0.79
Offset:-1
Orientation:forward strand
Alignment:-GTCACATG-
AAGCACATGG

USF1(HLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.77
Offset:-1
Orientation:forward strand
Alignment:-GTCACATG-
GGTCACGTGA

MA0464.1_Bhlhe40/Jaspar

Match Rank:8
Score:0.75
Offset:0
Orientation:forward strand
Alignment:GTCACATG---
CTCACGTGCAC

CLOCK(HLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer

Match Rank:9
Score:0.75
Offset:0
Orientation:forward strand
Alignment:GTCACATG
GHCACGTG

BMAL1(HLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer

Match Rank:10
Score:0.74
Offset:0
Orientation:forward strand
Alignment:GTCACATG
GNCACGTG