Information for motif21


Reverse Opposite:

p-value:1e-17
log p-value:-3.963e+01
Information Content per bp:1.530
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif0.14%
Number of Background Sequences with motif3.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets66.1 +/- 46.3bp
Average Position of motif in Background122.1 +/- 63.5bp
Strand Bias (log2 ratio + to - strand density)-1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:1
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:AAGGCATTAC
-NGGGATTA-

PH0138.1_Pitx2/Jaspar

Match Rank:2
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--AAGGCATTAC-----
TGAAGGGATTAATCATC

PH0035.1_Gsc/Jaspar

Match Rank:3
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--AAGGCATTAC-----
NNAAGGGATTAACGANT

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:4
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:AAGGCATTAC-
---YCATTAMC

PH0137.1_Pitx1/Jaspar

Match Rank:5
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---AAGGCATTAC----
TTAGAGGGATTAACAAT

PH0130.1_Otx2/Jaspar

Match Rank:6
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--AAGGCATTAC-----
TGTAGGGATTAATTGTC

PH0129.1_Otx1/Jaspar

Match Rank:7
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--AAGGCATTAC-----
AGAGGGGATTAATTTAT

PH0125.1_Obox5_2/Jaspar

Match Rank:8
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--AAGGCATTAC-----
NANAGGGATTAATTATN

MA0132.1_Pdx1/Jaspar

Match Rank:9
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:AAGGCATTAC
----AATTAG

PH0121.1_Obox1/Jaspar

Match Rank:10
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---AAGGCATTAC----
TTAAGGGGATTAACTAC