Information for motif33


Reverse Opposite:

p-value:1e-8
log p-value:-1.923e+01
Information Content per bp:1.892
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif0.10%
Number of Background Sequences with motif5.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets129.0 +/- 62.8bp
Average Position of motif in Background181.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0087.1_Sox5/Jaspar

Match Rank:1
Score:0.71
Offset:4
Orientation:forward strand
Alignment:TCTGATTGTTGC
----ATTGTTA-

MF0011.1_HMG_class/Jaspar

Match Rank:2
Score:0.70
Offset:4
Orientation:forward strand
Alignment:TCTGATTGTTGC
----ATTGTT--

MA0070.1_PBX1/Jaspar

Match Rank:3
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:TCTGATTGTTGC
TTTGATTGATGN

MA0060.2_NFYA/Jaspar

Match Rank:4
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----TCTGATTGTTGC-
AGAGTGCTGATTGGTCCA

PB0070.1_Sox30_1/Jaspar

Match Rank:5
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--TCTGATTGTTGC--
ANNTCCATTGTTCNNN

PB0172.1_Sox1_2/Jaspar

Match Rank:6
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-TCTGATTGTTGC--
CTATAATTGTTAGCG

PB0072.1_Sox5_1/Jaspar

Match Rank:7
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-TCTGATTGTTGC---
NNTTTATTGTTCTNNN

MA0502.1_NFYB/Jaspar

Match Rank:8
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:TCTGATTGTTGC----
-CTGATTGGTCNATTT

PB0062.1_Sox12_1/Jaspar

Match Rank:9
Score:0.63
Offset:2
Orientation:forward strand
Alignment:TCTGATTGTTGC----
--TAATTGTTCTAAAC

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:10
Score:0.63
Offset:2
Orientation:forward strand
Alignment:TCTGATTGTTGC
--CCATTGTTNY