Information for motif15


Reverse Opposite:

p-value:1e-71
log p-value:-1.649e+02
Information Content per bp:1.459
Number of Target Sequences with motif54.0
Percentage of Target Sequences with motif0.20%
Number of Background Sequences with motif1.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets105.7 +/- 48.2bp
Average Position of motif in Background120.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0484.1_HNF4G/Jaspar

Match Rank:1
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-VAGTGCAAAGCH--
AGAGTCCAAAGTCCA

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.68
Offset:1
Orientation:forward strand
Alignment:VAGTGCAAAGCH
-ACATCAAAGG-

MA0114.2_HNF4A/Jaspar

Match Rank:3
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:VAGTGCAAAGCH---
NAGNNCAAAGTCCAN

MA0523.1_TCF7L2/Jaspar

Match Rank:4
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-VAGTGCAAAGCH-
AAAGATCAAAGGAA

HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:5
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--VAGTGCAAAGCH--
CANAGNNCAAAGTCCA

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:6
Score:0.65
Offset:1
Orientation:forward strand
Alignment:VAGTGCAAAGCH
-ACWTCAAAGG-

RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:7
Score:0.65
Offset:0
Orientation:forward strand
Alignment:VAGTGCAAAGCH--
TAGGGCAAAGGTCA

Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer

Match Rank:8
Score:0.64
Offset:1
Orientation:forward strand
Alignment:VAGTGCAAAGCH-
-ACATCAAAGGNA

MA0017.1_NR2F1/Jaspar

Match Rank:9
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:VAGTGCAAAGCH--
AGGTTCAAAGGTCA

MA0065.2_PPARG::RXRA/Jaspar

Match Rank:10
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-VAGTGCAAAGCH--
GTAGGGCAAAGGTCA