Information for motif11


Reverse Opposite:

p-value:1e-23
log p-value:-5.447e+01
Information Content per bp:1.942
Number of Target Sequences with motif29.0
Percentage of Target Sequences with motif0.30%
Number of Background Sequences with motif8.4
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets94.2 +/- 48.6bp
Average Position of motif in Background87.0 +/- 72.4bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:1
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:AGATGGTGCTAG---
AGATGCTRCTRCCHT

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:2
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---AGATGGTGCTAG
AACAGATGGC-----

MA0461.1_Atoh1/Jaspar

Match Rank:3
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-AGATGGTGCTAG
CAGATGGC-----

MA0091.1_TAL1::TCF3/Jaspar

Match Rank:4
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---AGATGGTGCTAG
AACAGATGGTCN---

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:5
Score:0.58
Offset:-6
Orientation:forward strand
Alignment:------AGATGGTGCTAG
AAGGCCAGATGGTCCGG-

HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer

Match Rank:6
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-AGATGGTGCTAG--
TAGAANVTTCTAGAA

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:7
Score:0.57
Offset:1
Orientation:forward strand
Alignment:AGATGGTGCTAG
-NATGTTGCAA-

MA0486.1_HSF1/Jaspar

Match Rank:8
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:AGATGGTGCTAG---
AGAANNTTCTAGAAN

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:AGATGGTGCTAG--
--CTGTTGCTAGGS

Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer

Match Rank:10
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---AGATGGTGCTAG
AACAKATGGY-----