Information for motif26


Reverse Opposite:

p-value:1e-14
log p-value:-3.297e+01
Information Content per bp:1.951
Number of Target Sequences with motif38.0
Percentage of Target Sequences with motif0.27%
Number of Background Sequences with motif20.0
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets99.3 +/- 43.7bp
Average Position of motif in Background126.7 +/- 60.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.26
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:1
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:CTGTAGAGTG---
---TTGAGTGSTT

MA0503.1_Nkx2-5_(var.2)/Jaspar

Match Rank:2
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:CTGTAGAGTG---
--CTTGAGTGGCT

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:3
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:CTGTAGAGTG--
--CTYRAGTGSY

PH0158.1_Rhox11_2/Jaspar

Match Rank:4
Score:0.59
Offset:-6
Orientation:forward strand
Alignment:------CTGTAGAGTG-
AGGACGCTGTAAAGGGA

MA0479.1_FOXH1/Jaspar

Match Rank:5
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CTGTAGAGTG--
-TGTGGATTNNN

POL009.1_DCE_S_II/Jaspar

Match Rank:6
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CTGTAGAGTG
GCTGTG-----

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CTGTAGAGTG-
NNTGTGGATTSS

PH0157.1_Rhox11_1/Jaspar

Match Rank:8
Score:0.56
Offset:-6
Orientation:forward strand
Alignment:------CTGTAGAGTG-
AAGACGCTGTAAAGCGA

Srebp2(HLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:CTGTAGAGTG----
--GTGGCGTGACNG

Srebp1a(HLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:CTGTAGAGTG--
--ATGGGGTGAT