Information for motif23


Reverse Opposite:

p-value:1e-16
log p-value:-3.788e+01
Information Content per bp:1.932
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif0.12%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets99.2 +/- 55.4bp
Average Position of motif in Background124.7 +/- 71.8bp
Strand Bias (log2 ratio + to - strand density)-1.8
Multiplicity (# of sites on avg that occur together)2.50
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0007.2_AR/Jaspar

Match Rank:1
Score:0.74
Offset:-3
Orientation:reverse strand
Alignment:---CAGMCTGTKCTC
GNACANNNTGTTCTT

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:2
Score:0.73
Offset:-3
Orientation:reverse strand
Alignment:---CAGMCTGTKCTC
GVACAGNMTGTYCTB

ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.71
Offset:-4
Orientation:forward strand
Alignment:----CAGMCTGTKCTC
AGNACAGNCTGTTCTN

GRE/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---CAGMCTGTKCTC
GRACAGWMTGTYCTB

GRE(NR/IR3)/A549-GR-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----CAGMCTGTKCTC
AGNACANNNTGTNCTN

MA0113.2_NR3C1/Jaspar

Match Rank:6
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----CAGMCTGTKCTC
AGAACAGAATGTTCT-

PB0099.1_Zfp691_1/Jaspar

Match Rank:7
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CAGMCTGTKCTC-----
CGAACAGTGCTCACTAT

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:8
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:CAGMCTGTKCTC--
----CTGTTCCTGG

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:9
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CAGMCTGTKCTC
BCAGACWA-----

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CAGMCTGTKCTC
CCAGACAG-----