Information for motif39


Reverse Opposite:

p-value:1e-3
log p-value:-8.339e+00
Information Content per bp:1.956
Number of Target Sequences with motif97.0
Percentage of Target Sequences with motif1.01%
Number of Background Sequences with motif279.0
Percentage of Background Sequences with motif0.69%
Average Position of motif in Targets103.5 +/- 56.5bp
Average Position of motif in Background99.4 +/- 56.6bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.15
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:1
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--GCCTAGAG
AGGCCTAG--

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--GCCTAGAG
AGGCCTNG--

MA0524.1_TFAP2C/Jaspar

Match Rank:3
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GCCTAGAG-----
TGCCCTGGGGCNANN

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:4
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GCCTAGAG----
NTGCCCANNGGTNA

MA0463.1_Bcl6/Jaspar

Match Rank:5
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GCCTAGAG----
TTTCCTAGAAAGCA

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:6
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--GCCTAGAG
TGACCTTGAN

MA0146.2_Zfx/Jaspar

Match Rank:7
Score:0.56
Offset:-9
Orientation:forward strand
Alignment:---------GCCTAGAG
GGGGCCGAGGCCTG---

MA0161.1_NFIC/Jaspar

Match Rank:8
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-GCCTAGAG
TGCCAA---

PB0191.1_Tcfap2c_2/Jaspar

Match Rank:9
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GCCTAGAG----
CCGCCCAAGGGCAG

PB0140.1_Irf6_2/Jaspar

Match Rank:10
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---GCCTAGAG----
NNNACCGAGAGTNNN