Information for motif13


Reverse Opposite:

p-value:1e-27
log p-value:-6.435e+01
Information Content per bp:1.619
Number of Target Sequences with motif5035.0
Percentage of Target Sequences with motif35.15%
Number of Background Sequences with motif10919.2
Percentage of Background Sequences with motif30.83%
Average Position of motif in Targets100.4 +/- 56.1bp
Average Position of motif in Background100.3 +/- 60.1bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.48
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.80
Offset:-2
Orientation:reverse strand
Alignment:--CCCTGCGG--
CCCCCTGCTGTG

MA0524.1_TFAP2C/Jaspar

Match Rank:2
Score:0.78
Offset:-2
Orientation:reverse strand
Alignment:--CCCTGCGG-----
TGCCCTGGGGCNANN

MA0154.2_EBF1/Jaspar

Match Rank:3
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-CCCTGCGG--
TCCCTGGGGAN

EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer

Match Rank:4
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---CCCTGCGG-
GTCCCCAGGGGA

PB0206.1_Zic2_2/Jaspar

Match Rank:5
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--CCCTGCGG-----
TCNCCTGCTGNGNNN

PB0205.1_Zic1_2/Jaspar

Match Rank:6
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--CCCTGCGG-----
TNTCCTGCTGTGNNG

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---CCCTGCGG-
ATGCCCTGAGGC

MA0003.2_TFAP2A/Jaspar

Match Rank:8
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--CCCTGCGG-----
TGCCCTGAGGCANTN

PB0085.1_Tcfap2a_1/Jaspar

Match Rank:9
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---CCCTGCGG----
ATTCCCTGAGGGGAA

PB0207.1_Zic3_2/Jaspar

Match Rank:10
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--CCCTGCGG-----
NNTCCTGCTGTGNNN