Information for motif4


Reverse Opposite:

p-value:1e-59
log p-value:-1.379e+02
Information Content per bp:1.824
Number of Target Sequences with motif1892.0
Percentage of Target Sequences with motif19.75%
Number of Background Sequences with motif5507.6
Percentage of Background Sequences with motif13.68%
Average Position of motif in Targets100.4 +/- 55.0bp
Average Position of motif in Background100.6 +/- 59.1bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0143.3_Sox2/Jaspar

Match Rank:1
Score:0.95
Offset:0
Orientation:reverse strand
Alignment:AACAAAGG
AACAAAGG

PB0061.1_Sox11_1/Jaspar

Match Rank:2
Score:0.94
Offset:-5
Orientation:forward strand
Alignment:-----AACAAAGG----
ATAAGAACAAAGGACTA

PB0071.1_Sox4_1/Jaspar

Match Rank:3
Score:0.94
Offset:-5
Orientation:forward strand
Alignment:-----AACAAAGG----
AGAAGAACAAAGGACTA

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:4
Score:0.93
Offset:0
Orientation:reverse strand
Alignment:AACAAAGG
RACAAWGG

MA0514.1_Sox3/Jaspar

Match Rank:5
Score:0.92
Offset:-2
Orientation:reverse strand
Alignment:--AACAAAGG
AAAACAAAGG

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.91
Offset:-1
Orientation:reverse strand
Alignment:-AACAAAGG-
GAACAATGGN

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:7
Score:0.88
Offset:-2
Orientation:reverse strand
Alignment:--AACAAAGG
RNAACAATGG

MA0515.1_Sox6/Jaspar

Match Rank:8
Score:0.88
Offset:-2
Orientation:reverse strand
Alignment:--AACAAAGG
AAAACAATGG

MA0442.1_SOX10/Jaspar

Match Rank:9
Score:0.87
Offset:1
Orientation:reverse strand
Alignment:AACAAAGG
-ACAAAG-

MA0077.1_SOX9/Jaspar

Match Rank:10
Score:0.83
Offset:-1
Orientation:reverse strand
Alignment:-AACAAAGG
GAACAATGG