Information for motif18


Reverse Opposite:

p-value:1e-15
log p-value:-3.604e+01
Information Content per bp:1.530
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif0.15%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets89.0 +/- 42.5bp
Average Position of motif in Background103.9 +/- 45.1bp
Strand Bias (log2 ratio + to - strand density)-1.9
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0131.1_HINFP/Jaspar

Match Rank:1
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CGAAAGTCTGCG
-TAACGTCCGC-

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:2
Score:0.59
Offset:3
Orientation:forward strand
Alignment:CGAAAGTCTGCG
---TWGTCTGV-

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CGAAAGTCTGCG
-VBSYGTCTGG-

T1ISRE(IRF)/Ifnb-Exp/Homer

Match Rank:4
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----CGAAAGTCTGCG
AGAAACGAAAGT-----

ETS(ETS)/Promoter/Homer

Match Rank:5
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---CGAAAGTCTGCG
AACCGGAAGT-----

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.56
Offset:3
Orientation:forward strand
Alignment:CGAAAGTCTGCG
---CTGTCTGG-

ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer

Match Rank:7
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---CGAAAGTCTGCG
ANCCGGAAGT-----

PRDM1/BMI1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.55
Offset:-5
Orientation:reverse strand
Alignment:-----CGAAAGTCTGCG
GAAAGTGAAAGT-----

GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer

Match Rank:9
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---CGAAAGTCTGCG
NACCGGAAGT-----

PB0134.1_Hnf4a_2/Jaspar

Match Rank:10
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--CGAAAGTCTGCG--
GGCAAAAGTCCAATAA