Information for motif39


Reverse Opposite:

p-value:1e-5
log p-value:-1.236e+01
Information Content per bp:1.496
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.04%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets84.5 +/- 50.4bp
Average Position of motif in Background139.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-3.0
Multiplicity (# of sites on avg that occur together)7.50
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.56
Offset:5
Orientation:forward strand
Alignment:AGHRYATGGCTA-
-----TWGTCTGV

MA0089.1_NFE2L1::MafG/Jaspar

Match Rank:2
Score:0.55
Offset:4
Orientation:forward strand
Alignment:AGHRYATGGCTA
----CATGAC--

MA0161.1_NFIC/Jaspar

Match Rank:3
Score:0.53
Offset:5
Orientation:forward strand
Alignment:AGHRYATGGCTA
-----TTGGCA-

POL010.1_DCE_S_III/Jaspar

Match Rank:4
Score:0.52
Offset:7
Orientation:reverse strand
Alignment:AGHRYATGGCTA
-------NGCTN

PAX3:FKHR-fusion(Paired/Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:5
Score:0.52
Offset:2
Orientation:forward strand
Alignment:AGHRYATGGCTA-----
--ACCGTGACTAATTNN

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:AGHRYATGGCTA
-GTTAATGGCC-

POL004.1_CCAAT-box/Jaspar

Match Rank:7
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:AGHRYATGGCTA--
--TGATTGGCTANN

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:8
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:AGHRYATGGCTA
AACAGATGGC--

MA0067.1_Pax2/Jaspar

Match Rank:9
Score:0.50
Offset:3
Orientation:reverse strand
Alignment:AGHRYATGGCTA
---NCGTGACN-

MA0058.2_MAX/Jaspar

Match Rank:10
Score:0.49
Offset:-1
Orientation:forward strand
Alignment:-AGHRYATGGCTA
AAGCACATGG---