Information for motif5


Reverse Opposite:

p-value:1e-112
log p-value:-2.589e+02
Information Content per bp:1.628
Number of Target Sequences with motif2005.0
Percentage of Target Sequences with motif7.35%
Number of Background Sequences with motif1164.5
Percentage of Background Sequences with motif4.31%
Average Position of motif in Targets100.9 +/- 54.9bp
Average Position of motif in Background99.1 +/- 61.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:1
Score:0.89
Offset:1
Orientation:forward strand
Alignment:CTAATTAGCA
-TAATTAGN-

PH0131.1_Pax4/Jaspar

Match Rank:2
Score:0.89
Offset:-4
Orientation:forward strand
Alignment:----CTAATTAGCA---
TGAACTAATTAGCCCAC

PB0031.1_Hoxa3_1/Jaspar

Match Rank:3
Score:0.89
Offset:-1
Orientation:reverse strand
Alignment:-CTAATTAGCA---
GTTAATTANCTCNN

PH0155.1_Prrx2/Jaspar

Match Rank:4
Score:0.88
Offset:-5
Orientation:reverse strand
Alignment:-----CTAATTAGCA--
NTTCGCTAATTAGCTNT

Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer

Match Rank:5
Score:0.88
Offset:0
Orientation:reverse strand
Alignment:CTAATTAGCA
YTAATTAVHT

PH0097.1_Lhx6_2/Jaspar

Match Rank:6
Score:0.88
Offset:-4
Orientation:forward strand
Alignment:----CTAATTAGCA---
TCCACTAATTAGCGGTT

PH0050.1_Hoxa3/Jaspar

Match Rank:7
Score:0.87
Offset:-1
Orientation:reverse strand
Alignment:-CTAATTAGCA---
ACTAATTANCNCNA

PH0074.1_Hoxd1/Jaspar

Match Rank:8
Score:0.86
Offset:-4
Orientation:forward strand
Alignment:----CTAATTAGCA---
TAAACTAATTAGCTGTA

PH0160.1_Shox2/Jaspar

Match Rank:9
Score:0.86
Offset:-5
Orientation:reverse strand
Alignment:-----CTAATTAGCA--
NNNAATTAATTAANNNG

PH0032.1_Evx2/Jaspar

Match Rank:10
Score:0.86
Offset:-4
Orientation:reverse strand
Alignment:----CTAATTAGCA---
ANCGCTAATTAGCGGTN