Information for motif6


Reverse Opposite:

p-value:1e-103
log p-value:-2.373e+02
Information Content per bp:1.859
Number of Target Sequences with motif128.0
Percentage of Target Sequences with motif0.47%
Number of Background Sequences with motif8.3
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets95.3 +/- 51.0bp
Average Position of motif in Background133.2 +/- 55.0bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.79
Offset:0
Orientation:forward strand
Alignment:CATGTCACTCAA
NCTGTCAATCAN

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:2
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-CATGTCACTCAA
GSCTGTCACTCA-

MA0498.1_Meis1/Jaspar

Match Rank:3
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-CATGTCACTCAA--
AGCTGTCACTCACCT

PH0141.1_Pknox2/Jaspar

Match Rank:4
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----CATGTCACTCAA
AAGCACCTGTCAATAT-

MA0067.1_Pax2/Jaspar

Match Rank:5
Score:0.63
Offset:2
Orientation:forward strand
Alignment:CATGTCACTCAA
--AGTCACGC--

MA0526.1_USF2/Jaspar

Match Rank:6
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CATGTCACTCAA
GTCATGTGACC---

PH0140.1_Pknox1/Jaspar

Match Rank:7
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----CATGTCACTCAA
AAAGACCTGTCAATCC-

PH0105.1_Meis3/Jaspar

Match Rank:8
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----CATGTCACTCAA
AATTACCTGTCAATAC-

PH0169.1_Tgif1/Jaspar

Match Rank:9
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----CATGTCACTCAA
NNNCAGCTGTCAATATN

MA0503.1_Nkx2-5_(var.2)/Jaspar

Match Rank:10
Score:0.60
Offset:2
Orientation:forward strand
Alignment:CATGTCACTCAA-
--AGCCACTCAAG