Information for motif3


Reverse Opposite:

p-value:1e-383
log p-value:-8.824e+02
Information Content per bp:1.669
Number of Target Sequences with motif3001.0
Percentage of Target Sequences with motif11.00%
Number of Background Sequences with motif1280.7
Percentage of Background Sequences with motif4.74%
Average Position of motif in Targets102.3 +/- 54.0bp
Average Position of motif in Background82.7 +/- 59.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.24
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.97
Offset:0
Orientation:forward strand
Alignment:RRCCAATCAR
AGCCAATCGG

MA0502.1_NFYB/Jaspar

Match Rank:2
Score:0.95
Offset:-5
Orientation:forward strand
Alignment:-----RRCCAATCAR
AAATGGACCAATCAG

POL004.1_CCAAT-box/Jaspar

Match Rank:3
Score:0.94
Offset:-3
Orientation:forward strand
Alignment:---RRCCAATCAR
ACTAGCCAATCA-

MA0060.2_NFYA/Jaspar

Match Rank:4
Score:0.87
Offset:-2
Orientation:reverse strand
Alignment:--RRCCAATCAR------
TGGACCAATCAGCACTCT

PH0026.1_Duxbl/Jaspar

Match Rank:5
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--RRCCAATCAR-----
CGACCCAATCAACGGTG

MA0161.1_NFIC/Jaspar

Match Rank:6
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:RRCCAATCAR
TGCCAA----

PH0107.1_Msx2/Jaspar

Match Rank:7
Score:0.73
Offset:-3
Orientation:forward strand
Alignment:---RRCCAATCAR----
GAAGACCAATTAGCGCT

PH0089.1_Isx/Jaspar

Match Rank:8
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--RRCCAATCAR----
ACNNCTAATTAGNNNN

PH0005.1_Barhl1/Jaspar

Match Rank:9
Score:0.73
Offset:-3
Orientation:forward strand
Alignment:---RRCCAATCAR---
AACAACCAATTAATTC

MA0125.1_Nobox/Jaspar

Match Rank:10
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:RRCCAATCAR
-ACCAATTA-