Information for motif34


Reverse Opposite:

p-value:1e-8
log p-value:-1.913e+01
Information Content per bp:1.692
Number of Target Sequences with motif91.0
Percentage of Target Sequences with motif0.64%
Number of Background Sequences with motif115.5
Percentage of Background Sequences with motif0.33%
Average Position of motif in Targets97.3 +/- 52.1bp
Average Position of motif in Background112.3 +/- 58.6bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.62
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0163.1_Six6_2/Jaspar

Match Rank:1
Score:0.71
Offset:-4
Orientation:reverse strand
Alignment:----GGGTATATCA---
ANNNGGATATATCCNNN

MA0033.1_FOXL1/Jaspar

Match Rank:2
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:GGGTATATCA-
---TATGTNTA

NFkB-p65-Rel(RHD)/LPS-exp(GSE23622)/Homer

Match Rank:3
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GGGTATATCA
GGGAATTTCC

MF0003.1_REL_class/Jaspar

Match Rank:4
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GGGTATATCA
GGGGATTTCC

PB0094.1_Zfp128_1/Jaspar

Match Rank:5
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---GGGTATATCA----
TTNGGGTACGCCNNANN

PB0059.1_Six6_1/Jaspar

Match Rank:6
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----GGGTATATCA---
AATAGGGTATCATATAT

MA0032.1_FOXC1/Jaspar

Match Rank:7
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---GGGTATATCA
GGTAAGTA-----

MA0107.1_RELA/Jaspar

Match Rank:8
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GGGTATATCA
GGGAATTTCC

PH0162.1_Six2/Jaspar

Match Rank:9
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----GGGTATATCA---
AATGGGGTATCACGTTT

PB0133.1_Hic1_2/Jaspar

Match Rank:10
Score:0.58
Offset:-6
Orientation:reverse strand
Alignment:------GGGTATATCA
NNNNTTGGGCACNNCN