Information for motif17


Reverse Opposite:

p-value:1e-63
log p-value:-1.451e+02
Information Content per bp:1.870
Number of Target Sequences with motif59.0
Percentage of Target Sequences with motif0.22%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets102.1 +/- 63.9bp
Average Position of motif in Background132.9 +/- 72.5bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0514.1_Sox3/Jaspar

Match Rank:1
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-CTTTGTCTGGTC
CCTTTGTTTT---

PB0166.1_Sox12_2/Jaspar

Match Rank:2
Score:0.70
Offset:-4
Orientation:reverse strand
Alignment:----CTTTGTCTGGTC
ANTCCTTTGTCTNNNN

MA0442.1_SOX10/Jaspar

Match Rank:3
Score:0.69
Offset:0
Orientation:forward strand
Alignment:CTTTGTCTGGTC
CTTTGT------

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:4
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CTTTGTCTGGTC
CCWTTGTY-----

MA0515.1_Sox6/Jaspar

Match Rank:5
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CTTTGTCTGGTC
CCATTGTTTT---

MA0143.3_Sox2/Jaspar

Match Rank:6
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CTTTGTCTGGTC
CCTTTGTT-----

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:7
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CTTTGTCTGGTC
CCATTGTTNY---

PB0071.1_Sox4_1/Jaspar

Match Rank:8
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----CTTTGTCTGGTC
TNNTCCTTTGTTCTNNT

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CTTTGTCTGGTC
NCCATTGTTC----

PB0061.1_Sox11_1/Jaspar

Match Rank:10
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----CTTTGTCTGGTC
NNNTCCTTTGTTCTNNN