Information for motif18


Reverse Opposite:

p-value:1e-20
log p-value:-4.791e+01
Information Content per bp:1.530
Number of Target Sequences with motif29.0
Percentage of Target Sequences with motif0.20%
Number of Background Sequences with motif6.1
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets96.6 +/- 49.0bp
Average Position of motif in Background103.5 +/- 56.1bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0121.1_Foxj3_2/Jaspar

Match Rank:1
Score:0.79
Offset:-5
Orientation:reverse strand
Alignment:-----TGTTATGGTG--
NNCTTTGTTTTGNTNNN

PB0122.1_Foxk1_2/Jaspar

Match Rank:2
Score:0.77
Offset:-3
Orientation:reverse strand
Alignment:---TGTTATGGTG--
NNNTGTTGTTGTTNG

PB0120.1_Foxj1_2/Jaspar

Match Rank:3
Score:0.70
Offset:-4
Orientation:reverse strand
Alignment:----TGTTATGGTG-
GTNTTGTTGTGANNT

PB0123.1_Foxl1_2/Jaspar

Match Rank:4
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----TGTTATGGTG-
NNTTTTGTTTTGATNT

PB0119.1_Foxa2_2/Jaspar

Match Rank:5
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----TGTTATGGTG
NCNTTTGTTATTTNN

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:6
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-TGTTATGGTG
NTTTTATGAC-

PB0055.1_Rfx4_1/Jaspar

Match Rank:7
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----TGTTATGGTG
NNCGTTGCTATGGNN

MA0465.1_CDX2/Jaspar

Match Rank:8
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TGTTATGGTG-
TTTTATGGCTN

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:9
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:TGTTATGGTG--
NNHTGTGGTTWN

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer

Match Rank:10
Score:0.57
Offset:1
Orientation:forward strand
Alignment:TGTTATGGTG-
-GCTGTGGTTT