Homer Known Motif Enrichment Results (Motifs.WT.Specific)

Homer de novo Motif Results
Gene Ontology Enrichment Results
Known Motif Enrichment Results (txt file)
Total Target Sequences = 14326, Total Background Sequences = 35431
RankMotifNameP-valuelog P-pvalueq-value (Benjamini)# Target Sequences with Motif% of Targets Sequences with Motif# Background Sequences with Motif% of Background Sequences with MotifMotif File PDF
1FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer1e-287-6.622e+020.00002815.019.65%3404.99.61%motif file (matrix) pdf
2FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer1e-280-6.455e+020.00002383.016.64%2685.47.58%motif file (matrix) pdf
3Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer1e-220-5.073e+020.00002065.014.42%2415.06.82%motif file (matrix) pdf
4Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer1e-147-3.401e+020.00002391.016.69%3435.19.70%motif file (matrix) pdf
5CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer1e-131-3.034e+020.0000536.03.74%373.51.05%motif file (matrix) pdf
6FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer1e-108-2.495e+020.00001044.07.29%1214.53.43%motif file (matrix) pdf
7BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer1e-93-2.149e+020.0000614.04.29%588.51.66%motif file (matrix) pdf
8Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer1e-86-2.000e+020.00001871.013.06%2893.48.17%motif file (matrix) pdf
9Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer1e-79-1.822e+020.00002644.018.46%4561.112.88%motif file (matrix) pdf
10Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer1e-77-1.775e+020.00001488.010.39%2223.46.28%motif file (matrix) pdf
11Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer1e-68-1.577e+020.00001222.08.53%1779.45.02%motif file (matrix) pdf
12Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer1e-66-1.537e+020.00001725.012.04%2786.27.87%motif file (matrix) pdf
13Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer1e-60-1.393e+020.00001084.07.57%1578.54.46%motif file (matrix) pdf
14Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer1e-60-1.392e+020.00003294.022.99%6221.717.57%motif file (matrix) pdf
15GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer1e-58-1.338e+020.00002407.016.80%4312.612.18%motif file (matrix) pdf
16Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer1e-52-1.206e+020.00003575.024.96%6982.719.72%motif file (matrix) pdf
17Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer1e-44-1.017e+020.00003795.026.49%7633.621.55%motif file (matrix) pdf
18Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer1e-37-8.742e+010.00001862.013.00%3417.69.65%motif file (matrix) pdf
19Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer1e-37-8.732e+010.00001471.010.27%2583.17.29%motif file (matrix) pdf
20Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer1e-34-7.863e+010.00003014.021.04%6046.217.07%motif file (matrix) pdf
21Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer1e-32-7.463e+010.00002767.019.32%5520.115.59%motif file (matrix) pdf
22Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer1e-28-6.646e+010.0000672.04.69%1050.12.96%motif file (matrix) pdf
23CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer1e-28-6.558e+010.00003446.024.06%7163.920.23%motif file (matrix) pdf
24RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer1e-22-5.196e+010.0000189.01.32%207.60.59%motif file (matrix) pdf
25Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer1e-22-5.100e+010.0000205.01.43%235.40.66%motif file (matrix) pdf
26Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer1e-21-4.997e+010.00002375.016.58%4859.913.72%motif file (matrix) pdf
27Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer1e-21-4.895e+010.0000509.03.55%802.02.26%motif file (matrix) pdf
28Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer1e-20-4.827e+010.0000403.02.81%599.71.69%motif file (matrix) pdf
29Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer1e-19-4.551e+010.0000438.03.06%677.81.91%motif file (matrix) pdf
30Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer1e-19-4.435e+010.0000738.05.15%1290.73.64%motif file (matrix) pdf
31Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer1e-15-3.662e+010.00005889.041.11%13376.937.77%motif file (matrix) pdf
32TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer1e-15-3.510e+010.0000935.06.53%1771.55.00%motif file (matrix) pdf
33X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer1e-15-3.499e+010.0000216.01.51%294.70.83%motif file (matrix) pdf
34Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer1e-15-3.493e+010.00005812.040.57%13218.937.33%motif file (matrix) pdf
35Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer1e-15-3.456e+010.0000344.02.40%538.21.52%motif file (matrix) pdf
36Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer1e-13-3.072e+010.00005094.035.56%11551.132.62%motif file (matrix) pdf
37TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer1e-13-3.070e+010.00001195.08.34%2382.56.73%motif file (matrix) pdf
38Sp1(Zf)/Promoter/Homer1e-12-2.927e+010.0000434.03.03%744.62.10%motif file (matrix) pdf
39TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer1e-11-2.746e+010.0000159.01.11%213.90.60%motif file (matrix) pdf
40HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer1e-10-2.512e+010.0000667.04.66%1265.13.57%motif file (matrix) pdf
41Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer1e-9-2.243e+010.0000537.03.75%1004.02.84%motif file (matrix) pdf
42Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer1e-8-2.022e+010.00001737.012.13%3744.410.57%motif file (matrix) pdf
43OCT4-SOX2-TCF-NANOG((POU/Homeobox/HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer1e-8-2.002e+010.0000220.01.54%356.91.01%motif file (matrix) pdf
44Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer1e-7-1.762e+010.00002047.014.29%4511.712.74%motif file (matrix) pdf
45FOXA1:AR/LNCAP-AR-ChIP-Seq(GSE27824)/Homer1e-7-1.631e+010.000089.00.62%119.10.34%motif file (matrix) pdf
46Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer1e-6-1.587e+010.0000212.01.48%360.61.02%motif file (matrix) pdf
47Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer1e-6-1.568e+010.0000278.01.94%498.71.41%motif file (matrix) pdf
48Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer1e-6-1.523e+010.0000820.05.72%1699.44.80%motif file (matrix) pdf
49KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer1e-6-1.436e+010.00001942.013.56%4322.212.20%motif file (matrix) pdf
50E2A(HLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer1e-6-1.385e+010.00002447.017.08%5531.915.62%motif file (matrix) pdf
51GATA:SCL/Ter119-SCL-ChIP-Seq(GSE18720)/Homer1e-5-1.372e+010.0000201.01.40%349.10.99%motif file (matrix) pdf
52CTCF-SatelliteElement/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer1e-5-1.343e+010.000038.00.27%39.80.11%motif file (matrix) pdf
53Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer1e-5-1.178e+010.00001223.08.54%2678.47.56%motif file (matrix) pdf
54Pax7-long(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer1e-4-1.127e+010.000138.00.27%43.30.12%motif file (matrix) pdf
55REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer1e-4-1.116e+010.000131.00.22%32.10.09%motif file (matrix) pdf
56Pax7(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer1e-4-1.070e+010.0001111.00.77%181.30.51%motif file (matrix) pdf
57Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer1e-4-1.047e+010.00012136.014.91%4865.113.74%motif file (matrix) pdf
58EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer1e-4-1.026e+010.00011648.011.50%3708.310.47%motif file (matrix) pdf
59CRE(bZIP)/Promoter/Homer1e-4-9.953e+000.0002272.01.90%526.91.49%motif file (matrix) pdf
60Ptf1a(HLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer1e-3-8.767e+000.00064165.029.08%9816.327.72%motif file (matrix) pdf
61NFY(CCAAT)/Promoter/Homer1e-3-8.697e+000.0007997.06.96%2203.26.22%motif file (matrix) pdf
62NF1:FOXA1/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer1e-3-8.592e+000.000769.00.48%107.30.30%motif file (matrix) pdf
63MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer1e-3-7.988e+000.00131782.012.44%4080.711.52%motif file (matrix) pdf
64Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer1e-3-7.624e+000.0019154.01.08%288.50.81%motif file (matrix) pdf
65GATA-IR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer1e-3-7.558e+000.0020109.00.76%193.80.55%motif file (matrix) pdf
66E-box(HLH)/Promoter/Homer1e-3-7.060e+000.003299.00.69%175.20.49%motif file (matrix) pdf
67MyoD(HLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer1e-2-6.754e+000.00431288.08.99%2932.88.28%motif file (matrix) pdf
68Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer1e-2-6.738e+000.0043859.06.00%1916.05.41%motif file (matrix) pdf
69Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer1e-2-6.726e+000.0043931.06.50%2086.85.89%motif file (matrix) pdf
70E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer1e-2-6.434e+000.0056547.03.82%1191.23.36%motif file (matrix) pdf
71Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer1e-2-6.306e+000.0063349.02.44%736.32.08%motif file (matrix) pdf
72PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer1e-2-6.206e+000.0069155.01.08%301.30.85%motif file (matrix) pdf
73MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer1e-2-5.971e+000.0086327.02.28%690.51.95%motif file (matrix) pdf
74Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer1e-2-5.871e+000.0094312.02.18%657.31.86%motif file (matrix) pdf
75Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer1e-2-5.653e+000.0115281.01.96%589.01.66%motif file (matrix) pdf
76E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer1e-2-5.399e+000.01462187.015.27%5132.214.49%motif file (matrix) pdf
77Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer1e-2-5.336e+000.0154238.01.66%495.11.40%motif file (matrix) pdf
78EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer1e-2-5.247e+000.0166328.02.29%702.51.98%motif file (matrix) pdf
79PRDM1/BMI1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer1e-2-5.169e+000.0177661.04.61%1481.14.18%motif file (matrix) pdf
80CHR/Cell-Cycle-Exp/Homer1e-2-5.165e+000.0177683.04.77%1533.44.33%motif file (matrix) pdf
81PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer1e-2-4.993e+000.0206706.04.93%1591.94.49%motif file (matrix) pdf
82c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer1e-2-4.855e+000.0234367.02.56%798.72.26%motif file (matrix) pdf
83Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer1e-2-4.847e+000.0234351.02.45%761.92.15%motif file (matrix) pdf
84NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer1e-2-4.843e+000.0234656.04.58%1476.74.17%motif file (matrix) pdf
85Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer1e-2-4.691e+000.0266688.04.80%1555.64.39%motif file (matrix) pdf