Information for motif25


Reverse Opposite:

p-value:1e-8
log p-value:-1.849e+01
Information Content per bp:1.949
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif0.16%
Number of Background Sequences with motif9.7
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets105.1 +/- 55.6bp
Average Position of motif in Background97.6 +/- 46.3bp
Strand Bias (log2 ratio + to - strand density)-1.4
Multiplicity (# of sites on avg that occur together)1.67
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0055.1_Rfx4_1/Jaspar

Match Rank:1
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-TTCATAGCATCC--
TACCATAGCAACGGT

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:2
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-TTCATAGCATCC--
CCGCATAGCAACGGA

PB0054.1_Rfx3_1/Jaspar

Match Rank:3
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----TTCATAGCATCC------
TGTGACCCTTAGCAACCGATTAA

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.59
Offset:1
Orientation:forward strand
Alignment:TTCATAGCATCC-
-SCCTAGCAACAG

PB0178.1_Sox8_2/Jaspar

Match Rank:5
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---TTCATAGCATCC
ACATTCATGACACG-

MA0510.1_RFX5/Jaspar

Match Rank:6
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-TTCATAGCATCC--
CTCCCTGGCAACAGC

PB0170.1_Sox17_2/Jaspar

Match Rank:7
Score:0.56
Offset:-7
Orientation:forward strand
Alignment:-------TTCATAGCATCC
GACCACATTCATACAAT--

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--TTCATAGCATCC
ACATCAAAGG----

Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer

Match Rank:9
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:TTCATAGCATCC-
---ATTGCATCAK

MA0509.1_Rfx1/Jaspar

Match Rank:10
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---TTCATAGCATCC
GTTGCCATGGCAAC-