Information for motif31


Reverse Opposite:

p-value:1e-25
log p-value:-5.876e+01
Information Content per bp:1.892
Number of Target Sequences with motif25.0
Percentage of Target Sequences with motif0.09%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets104.8 +/- 49.9bp
Average Position of motif in Background58.3 +/- 29.2bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)2.56
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0135.1_Hoxa3_2/Jaspar

Match Rank:1
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CTAAATGGGTTG-
CCTTAATNGNTTTT

PH0006.1_Barhl2/Jaspar

Match Rank:2
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CTAAATGGGTTG--
NNNTTAATTGGTTTTT

PH0088.1_Isl2/Jaspar

Match Rank:3
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CTAAATGGGTTG--
AAATTAATTGATTTNG

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:4
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----CTAAATGGGTTG-
NTNNTTAAGTGGNTNAN

PH0089.1_Isx/Jaspar

Match Rank:5
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----CTAAATGGGTTG
ACNNCTAATTAGNNNN

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:6
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CTAAATGGGTTG
CTAATKGV----

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CTAAATGGGTTG
GTTAATGGCC--

PH0005.1_Barhl1/Jaspar

Match Rank:8
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CTAAATGGGTTG-
GNNTTAATTGGTTGTT

PH0115.1_Nkx2-6/Jaspar

Match Rank:9
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----CTAAATGGGTTG
AATNTTAAGTGGNTNN

PH0004.1_Nkx3-2/Jaspar

Match Rank:10
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----CTAAATGGGTTG-
NTNNTTAAGTGGTTANN