Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
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1 |  | FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer | 1e-287 | -6.622e+02 | 0.0000 | 2815.0 | 19.65% | 3404.9 | 9.61% | motif file (matrix) |
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2 |  | FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer | 1e-280 | -6.455e+02 | 0.0000 | 2383.0 | 16.64% | 2685.4 | 7.58% | motif file (matrix) |
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3 |  | Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer | 1e-220 | -5.073e+02 | 0.0000 | 2065.0 | 14.42% | 2415.0 | 6.82% | motif file (matrix) |
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4 |  | Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer | 1e-147 | -3.401e+02 | 0.0000 | 2391.0 | 16.69% | 3435.1 | 9.70% | motif file (matrix) |
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5 |  | CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer | 1e-131 | -3.034e+02 | 0.0000 | 536.0 | 3.74% | 373.5 | 1.05% | motif file (matrix) |
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6 |  | FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer | 1e-108 | -2.495e+02 | 0.0000 | 1044.0 | 7.29% | 1214.5 | 3.43% | motif file (matrix) |
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7 |  | BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer | 1e-93 | -2.149e+02 | 0.0000 | 614.0 | 4.29% | 588.5 | 1.66% | motif file (matrix) |
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8 |  | Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer | 1e-86 | -2.000e+02 | 0.0000 | 1871.0 | 13.06% | 2893.4 | 8.17% | motif file (matrix) |
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9 |  | Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer | 1e-79 | -1.822e+02 | 0.0000 | 2644.0 | 18.46% | 4561.1 | 12.88% | motif file (matrix) |
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10 |  | Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-77 | -1.775e+02 | 0.0000 | 1488.0 | 10.39% | 2223.4 | 6.28% | motif file (matrix) |
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11 |  | Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer | 1e-68 | -1.577e+02 | 0.0000 | 1222.0 | 8.53% | 1779.4 | 5.02% | motif file (matrix) |
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12 |  | Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer | 1e-66 | -1.537e+02 | 0.0000 | 1725.0 | 12.04% | 2786.2 | 7.87% | motif file (matrix) |
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13 |  | Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer | 1e-60 | -1.393e+02 | 0.0000 | 1084.0 | 7.57% | 1578.5 | 4.46% | motif file (matrix) |
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14 |  | Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer | 1e-60 | -1.392e+02 | 0.0000 | 3294.0 | 22.99% | 6221.7 | 17.57% | motif file (matrix) |
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15 |  | GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer | 1e-58 | -1.338e+02 | 0.0000 | 2407.0 | 16.80% | 4312.6 | 12.18% | motif file (matrix) |
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16 |  | Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer | 1e-52 | -1.206e+02 | 0.0000 | 3575.0 | 24.96% | 6982.7 | 19.72% | motif file (matrix) |
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17 |  | Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer | 1e-44 | -1.017e+02 | 0.0000 | 3795.0 | 26.49% | 7633.6 | 21.55% | motif file (matrix) |
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18 |  | Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer | 1e-37 | -8.742e+01 | 0.0000 | 1862.0 | 13.00% | 3417.6 | 9.65% | motif file (matrix) |
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19 |  | Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer | 1e-37 | -8.732e+01 | 0.0000 | 1471.0 | 10.27% | 2583.1 | 7.29% | motif file (matrix) |
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20 |  | Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer | 1e-34 | -7.863e+01 | 0.0000 | 3014.0 | 21.04% | 6046.2 | 17.07% | motif file (matrix) |
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21 |  | Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer | 1e-32 | -7.463e+01 | 0.0000 | 2767.0 | 19.32% | 5520.1 | 15.59% | motif file (matrix) |
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22 |  | Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer | 1e-28 | -6.646e+01 | 0.0000 | 672.0 | 4.69% | 1050.1 | 2.96% | motif file (matrix) |
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23 |  | CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer | 1e-28 | -6.558e+01 | 0.0000 | 3446.0 | 24.06% | 7163.9 | 20.23% | motif file (matrix) |
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24 |  | RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer | 1e-22 | -5.196e+01 | 0.0000 | 189.0 | 1.32% | 207.6 | 0.59% | motif file (matrix) |
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25 |  | Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer | 1e-22 | -5.100e+01 | 0.0000 | 205.0 | 1.43% | 235.4 | 0.66% | motif file (matrix) |
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26 |  | Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer | 1e-21 | -4.997e+01 | 0.0000 | 2375.0 | 16.58% | 4859.9 | 13.72% | motif file (matrix) |
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27 |  | Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer | 1e-21 | -4.895e+01 | 0.0000 | 509.0 | 3.55% | 802.0 | 2.26% | motif file (matrix) |
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28 |  | Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer | 1e-20 | -4.827e+01 | 0.0000 | 403.0 | 2.81% | 599.7 | 1.69% | motif file (matrix) |
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29 |  | Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer | 1e-19 | -4.551e+01 | 0.0000 | 438.0 | 3.06% | 677.8 | 1.91% | motif file (matrix) |
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30 |  | Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer | 1e-19 | -4.435e+01 | 0.0000 | 738.0 | 5.15% | 1290.7 | 3.64% | motif file (matrix) |
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31 |  | Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-15 | -3.662e+01 | 0.0000 | 5889.0 | 41.11% | 13376.9 | 37.77% | motif file (matrix) |
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32 |  | TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer | 1e-15 | -3.510e+01 | 0.0000 | 935.0 | 6.53% | 1771.5 | 5.00% | motif file (matrix) |
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33 |  | X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-15 | -3.499e+01 | 0.0000 | 216.0 | 1.51% | 294.7 | 0.83% | motif file (matrix) |
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34 |  | Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer | 1e-15 | -3.493e+01 | 0.0000 | 5812.0 | 40.57% | 13218.9 | 37.33% | motif file (matrix) |
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35 |  | Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-15 | -3.456e+01 | 0.0000 | 344.0 | 2.40% | 538.2 | 1.52% | motif file (matrix) |
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36 |  | Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer | 1e-13 | -3.072e+01 | 0.0000 | 5094.0 | 35.56% | 11551.1 | 32.62% | motif file (matrix) |
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37 |  | TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer | 1e-13 | -3.070e+01 | 0.0000 | 1195.0 | 8.34% | 2382.5 | 6.73% | motif file (matrix) |
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38 |  | Sp1(Zf)/Promoter/Homer | 1e-12 | -2.927e+01 | 0.0000 | 434.0 | 3.03% | 744.6 | 2.10% | motif file (matrix) |
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39 |  | TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer | 1e-11 | -2.746e+01 | 0.0000 | 159.0 | 1.11% | 213.9 | 0.60% | motif file (matrix) |
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40 |  | HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer | 1e-10 | -2.512e+01 | 0.0000 | 667.0 | 4.66% | 1265.1 | 3.57% | motif file (matrix) |
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41 |  | Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer | 1e-9 | -2.243e+01 | 0.0000 | 537.0 | 3.75% | 1004.0 | 2.84% | motif file (matrix) |
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42 |  | Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer | 1e-8 | -2.022e+01 | 0.0000 | 1737.0 | 12.13% | 3744.4 | 10.57% | motif file (matrix) |
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43 |  | OCT4-SOX2-TCF-NANOG((POU/Homeobox/HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer | 1e-8 | -2.002e+01 | 0.0000 | 220.0 | 1.54% | 356.9 | 1.01% | motif file (matrix) |
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44 |  | Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer | 1e-7 | -1.762e+01 | 0.0000 | 2047.0 | 14.29% | 4511.7 | 12.74% | motif file (matrix) |
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45 |  | FOXA1:AR/LNCAP-AR-ChIP-Seq(GSE27824)/Homer | 1e-7 | -1.631e+01 | 0.0000 | 89.0 | 0.62% | 119.1 | 0.34% | motif file (matrix) |
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46 |  | Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer | 1e-6 | -1.587e+01 | 0.0000 | 212.0 | 1.48% | 360.6 | 1.02% | motif file (matrix) |
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47 |  | Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer | 1e-6 | -1.568e+01 | 0.0000 | 278.0 | 1.94% | 498.7 | 1.41% | motif file (matrix) |
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48 |  | Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer | 1e-6 | -1.523e+01 | 0.0000 | 820.0 | 5.72% | 1699.4 | 4.80% | motif file (matrix) |
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49 |  | KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer | 1e-6 | -1.436e+01 | 0.0000 | 1942.0 | 13.56% | 4322.2 | 12.20% | motif file (matrix) |
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50 |  | E2A(HLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer | 1e-6 | -1.385e+01 | 0.0000 | 2447.0 | 17.08% | 5531.9 | 15.62% | motif file (matrix) |
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51 |  | GATA:SCL/Ter119-SCL-ChIP-Seq(GSE18720)/Homer | 1e-5 | -1.372e+01 | 0.0000 | 201.0 | 1.40% | 349.1 | 0.99% | motif file (matrix) |
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52 |  | CTCF-SatelliteElement/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer | 1e-5 | -1.343e+01 | 0.0000 | 38.0 | 0.27% | 39.8 | 0.11% | motif file (matrix) |
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53 |  | Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer | 1e-5 | -1.178e+01 | 0.0000 | 1223.0 | 8.54% | 2678.4 | 7.56% | motif file (matrix) |
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54 |  | Pax7-long(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer | 1e-4 | -1.127e+01 | 0.0001 | 38.0 | 0.27% | 43.3 | 0.12% | motif file (matrix) |
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55 |  | REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer | 1e-4 | -1.116e+01 | 0.0001 | 31.0 | 0.22% | 32.1 | 0.09% | motif file (matrix) |
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56 |  | Pax7(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer | 1e-4 | -1.070e+01 | 0.0001 | 111.0 | 0.77% | 181.3 | 0.51% | motif file (matrix) |
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57 |  | Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer | 1e-4 | -1.047e+01 | 0.0001 | 2136.0 | 14.91% | 4865.1 | 13.74% | motif file (matrix) |
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58 |  | EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer | 1e-4 | -1.026e+01 | 0.0001 | 1648.0 | 11.50% | 3708.3 | 10.47% | motif file (matrix) |
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59 |  | CRE(bZIP)/Promoter/Homer | 1e-4 | -9.953e+00 | 0.0002 | 272.0 | 1.90% | 526.9 | 1.49% | motif file (matrix) |
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60 |  | Ptf1a(HLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer | 1e-3 | -8.767e+00 | 0.0006 | 4165.0 | 29.08% | 9816.3 | 27.72% | motif file (matrix) |
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61 |  | NFY(CCAAT)/Promoter/Homer | 1e-3 | -8.697e+00 | 0.0007 | 997.0 | 6.96% | 2203.2 | 6.22% | motif file (matrix) |
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62 |  | NF1:FOXA1/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer | 1e-3 | -8.592e+00 | 0.0007 | 69.0 | 0.48% | 107.3 | 0.30% | motif file (matrix) |
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63 |  | MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer | 1e-3 | -7.988e+00 | 0.0013 | 1782.0 | 12.44% | 4080.7 | 11.52% | motif file (matrix) |
pdf |
64 |  | Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer | 1e-3 | -7.624e+00 | 0.0019 | 154.0 | 1.08% | 288.5 | 0.81% | motif file (matrix) |
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65 |  | GATA-IR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer | 1e-3 | -7.558e+00 | 0.0020 | 109.0 | 0.76% | 193.8 | 0.55% | motif file (matrix) |
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66 |  | E-box(HLH)/Promoter/Homer | 1e-3 | -7.060e+00 | 0.0032 | 99.0 | 0.69% | 175.2 | 0.49% | motif file (matrix) |
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67 |  | MyoD(HLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer | 1e-2 | -6.754e+00 | 0.0043 | 1288.0 | 8.99% | 2932.8 | 8.28% | motif file (matrix) |
pdf |
68 |  | Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer | 1e-2 | -6.738e+00 | 0.0043 | 859.0 | 6.00% | 1916.0 | 5.41% | motif file (matrix) |
pdf |
69 |  | Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer | 1e-2 | -6.726e+00 | 0.0043 | 931.0 | 6.50% | 2086.8 | 5.89% | motif file (matrix) |
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70 |  | E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer | 1e-2 | -6.434e+00 | 0.0056 | 547.0 | 3.82% | 1191.2 | 3.36% | motif file (matrix) |
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71 |  | Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer | 1e-2 | -6.306e+00 | 0.0063 | 349.0 | 2.44% | 736.3 | 2.08% | motif file (matrix) |
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72 |  | PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer | 1e-2 | -6.206e+00 | 0.0069 | 155.0 | 1.08% | 301.3 | 0.85% | motif file (matrix) |
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73 |  | MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer | 1e-2 | -5.971e+00 | 0.0086 | 327.0 | 2.28% | 690.5 | 1.95% | motif file (matrix) |
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74 |  | Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer | 1e-2 | -5.871e+00 | 0.0094 | 312.0 | 2.18% | 657.3 | 1.86% | motif file (matrix) |
pdf |
75 |  | Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer | 1e-2 | -5.653e+00 | 0.0115 | 281.0 | 1.96% | 589.0 | 1.66% | motif file (matrix) |
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76 |  | E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-2 | -5.399e+00 | 0.0146 | 2187.0 | 15.27% | 5132.2 | 14.49% | motif file (matrix) |
pdf |
77 |  | Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer | 1e-2 | -5.336e+00 | 0.0154 | 238.0 | 1.66% | 495.1 | 1.40% | motif file (matrix) |
pdf |
78 |  | EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer | 1e-2 | -5.247e+00 | 0.0166 | 328.0 | 2.29% | 702.5 | 1.98% | motif file (matrix) |
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79 |  | PRDM1/BMI1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer | 1e-2 | -5.169e+00 | 0.0177 | 661.0 | 4.61% | 1481.1 | 4.18% | motif file (matrix) |
pdf |
80 |  | CHR/Cell-Cycle-Exp/Homer | 1e-2 | -5.165e+00 | 0.0177 | 683.0 | 4.77% | 1533.4 | 4.33% | motif file (matrix) |
pdf |
81 |  | PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-2 | -4.993e+00 | 0.0206 | 706.0 | 4.93% | 1591.9 | 4.49% | motif file (matrix) |
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82 |  | c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer | 1e-2 | -4.855e+00 | 0.0234 | 367.0 | 2.56% | 798.7 | 2.26% | motif file (matrix) |
pdf |
83 |  | Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer | 1e-2 | -4.847e+00 | 0.0234 | 351.0 | 2.45% | 761.9 | 2.15% | motif file (matrix) |
pdf |
84 |  | NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer | 1e-2 | -4.843e+00 | 0.0234 | 656.0 | 4.58% | 1476.7 | 4.17% | motif file (matrix) |
pdf |
85 |  | Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer | 1e-2 | -4.691e+00 | 0.0266 | 688.0 | 4.80% | 1555.6 | 4.39% | motif file (matrix) |
pdf |