Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
PDF |
1 |  | FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer | 1e-185 | -4.280e+02 | 0.0000 | 1685.0 | 17.59% | 3336.0 | 8.28% | motif file (matrix) |
pdf |
2 |  | FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer | 1e-175 | -4.048e+02 | 0.0000 | 1415.0 | 14.77% | 2631.0 | 6.53% | motif file (matrix) |
pdf |
3 |  | Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer | 1e-140 | -3.246e+02 | 0.0000 | 1211.0 | 12.64% | 2308.0 | 5.73% | motif file (matrix) |
pdf |
4 |  | Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer | 1e-124 | -2.856e+02 | 0.0000 | 1496.0 | 15.62% | 3306.3 | 8.21% | motif file (matrix) |
pdf |
5 |  | CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer | 1e-97 | -2.255e+02 | 0.0000 | 394.0 | 4.11% | 464.8 | 1.15% | motif file (matrix) |
pdf |
6 |  | BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer | 1e-66 | -1.525e+02 | 0.0000 | 484.0 | 5.05% | 838.5 | 2.08% | motif file (matrix) |
pdf |
7 |  | FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer | 1e-56 | -1.304e+02 | 0.0000 | 581.0 | 6.06% | 1181.4 | 2.93% | motif file (matrix) |
pdf |
8 |  | Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer | 1e-56 | -1.291e+02 | 0.0000 | 1978.0 | 20.65% | 5893.8 | 14.64% | motif file (matrix) |
pdf |
9 |  | Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer | 1e-53 | -1.234e+02 | 0.0000 | 1084.0 | 11.32% | 2800.5 | 6.95% | motif file (matrix) |
pdf |
10 |  | TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer | 1e-52 | -1.217e+02 | 0.0000 | 981.0 | 10.24% | 2469.6 | 6.13% | motif file (matrix) |
pdf |
11 |  | TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer | 1e-45 | -1.058e+02 | 0.0000 | 734.0 | 7.66% | 1759.3 | 4.37% | motif file (matrix) |
pdf |
12 |  | Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer | 1e-44 | -1.023e+02 | 0.0000 | 1694.0 | 17.68% | 5100.0 | 12.67% | motif file (matrix) |
pdf |
13 |  | Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer | 1e-35 | -8.079e+01 | 0.0000 | 1003.0 | 10.47% | 2820.4 | 7.00% | motif file (matrix) |
pdf |
14 |  | Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer | 1e-34 | -7.896e+01 | 0.0000 | 704.0 | 7.35% | 1817.7 | 4.51% | motif file (matrix) |
pdf |
15 |  | Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer | 1e-33 | -7.823e+01 | 0.0000 | 2085.0 | 21.76% | 6810.8 | 16.91% | motif file (matrix) |
pdf |
16 |  | Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer | 1e-32 | -7.530e+01 | 0.0000 | 636.0 | 6.64% | 1616.1 | 4.01% | motif file (matrix) |
pdf |
17 |  | GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer | 1e-31 | -7.148e+01 | 0.0000 | 1388.0 | 14.49% | 4281.3 | 10.63% | motif file (matrix) |
pdf |
18 |  | Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer | 1e-23 | -5.526e+01 | 0.0000 | 1396.0 | 14.57% | 4491.3 | 11.15% | motif file (matrix) |
pdf |
19 |  | Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer | 1e-21 | -4.968e+01 | 0.0000 | 501.0 | 5.23% | 1336.6 | 3.32% | motif file (matrix) |
pdf |
20 |  | Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer | 1e-20 | -4.626e+01 | 0.0000 | 909.0 | 9.49% | 2798.5 | 6.95% | motif file (matrix) |
pdf |
21 |  | RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer | 1e-16 | -3.843e+01 | 0.0000 | 167.0 | 1.74% | 339.2 | 0.84% | motif file (matrix) |
pdf |
22 |  | Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer | 1e-15 | -3.667e+01 | 0.0000 | 179.0 | 1.87% | 381.2 | 0.95% | motif file (matrix) |
pdf |
23 |  | X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-15 | -3.619e+01 | 0.0000 | 180.0 | 1.88% | 386.5 | 0.96% | motif file (matrix) |
pdf |
24 |  | Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer | 1e-14 | -3.444e+01 | 0.0000 | 2016.0 | 21.04% | 7196.0 | 17.87% | motif file (matrix) |
pdf |
25 |  | Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer | 1e-12 | -2.983e+01 | 0.0000 | 291.0 | 3.04% | 773.1 | 1.92% | motif file (matrix) |
pdf |
26 |  | Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer | 1e-12 | -2.805e+01 | 0.0000 | 390.0 | 4.07% | 1125.3 | 2.79% | motif file (matrix) |
pdf |
27 |  | Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-11 | -2.717e+01 | 0.0000 | 271.0 | 2.83% | 725.6 | 1.80% | motif file (matrix) |
pdf |
28 |  | Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer | 1e-11 | -2.699e+01 | 0.0000 | 345.0 | 3.60% | 978.1 | 2.43% | motif file (matrix) |
pdf |
29 |  | Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer | 1e-11 | -2.620e+01 | 0.0000 | 3580.0 | 37.37% | 13704.5 | 34.03% | motif file (matrix) |
pdf |
30 |  | Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer | 1e-11 | -2.560e+01 | 0.0000 | 118.0 | 1.23% | 248.1 | 0.62% | motif file (matrix) |
pdf |
31 |  | Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-10 | -2.532e+01 | 0.0000 | 766.0 | 8.00% | 2523.9 | 6.27% | motif file (matrix) |
pdf |
32 |  | Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer | 1e-10 | -2.482e+01 | 0.0000 | 1934.0 | 20.19% | 7070.6 | 17.56% | motif file (matrix) |
pdf |
33 |  | Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer | 1e-10 | -2.481e+01 | 0.0000 | 130.0 | 1.36% | 287.2 | 0.71% | motif file (matrix) |
pdf |
34 |  | CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer | 1e-9 | -2.274e+01 | 0.0000 | 2005.0 | 20.93% | 7402.9 | 18.38% | motif file (matrix) |
pdf |
35 |  | Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer | 1e-9 | -2.266e+01 | 0.0000 | 221.0 | 2.31% | 590.2 | 1.47% | motif file (matrix) |
pdf |
36 |  | TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer | 1e-9 | -2.148e+01 | 0.0000 | 112.0 | 1.17% | 248.7 | 0.62% | motif file (matrix) |
pdf |
37 |  | GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer | 1e-9 | -2.122e+01 | 0.0000 | 361.0 | 3.77% | 1087.6 | 2.70% | motif file (matrix) |
pdf |
38 |  | Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer | 1e-7 | -1.825e+01 | 0.0000 | 952.0 | 9.94% | 3349.0 | 8.32% | motif file (matrix) |
pdf |
39 |  | Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer | 1e-7 | -1.769e+01 | 0.0000 | 246.0 | 2.57% | 715.6 | 1.78% | motif file (matrix) |
pdf |
40 |  | Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer | 1e-7 | -1.710e+01 | 0.0000 | 233.0 | 2.43% | 675.5 | 1.68% | motif file (matrix) |
pdf |
41 |  | Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer | 1e-7 | -1.703e+01 | 0.0000 | 1669.0 | 17.42% | 6203.2 | 15.41% | motif file (matrix) |
pdf |
42 |  | Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-7 | -1.694e+01 | 0.0000 | 3619.0 | 37.78% | 14153.9 | 35.15% | motif file (matrix) |
pdf |
43 |  | Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer | 1e-6 | -1.391e+01 | 0.0000 | 1818.0 | 18.98% | 6890.6 | 17.11% | motif file (matrix) |
pdf |
44 |  | Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer | 1e-5 | -1.365e+01 | 0.0000 | 487.0 | 5.08% | 1647.2 | 4.09% | motif file (matrix) |
pdf |
45 |  | Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer | 1e-5 | -1.321e+01 | 0.0000 | 2141.0 | 22.35% | 8221.8 | 20.42% | motif file (matrix) |
pdf |
46 |  | Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer | 1e-5 | -1.244e+01 | 0.0000 | 241.0 | 2.52% | 750.2 | 1.86% | motif file (matrix) |
pdf |
47 |  | REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer | 1e-5 | -1.217e+01 | 0.0000 | 23.0 | 0.24% | 32.0 | 0.08% | motif file (matrix) |
pdf |
48 |  | Pax7-long(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer | 1e-5 | -1.169e+01 | 0.0000 | 23.0 | 0.24% | 33.4 | 0.08% | motif file (matrix) |
pdf |
49 |  | Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer | 1e-4 | -9.934e+00 | 0.0002 | 1439.0 | 15.02% | 5489.8 | 13.63% | motif file (matrix) |
pdf |
50 |  | Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer | 1e-4 | -9.305e+00 | 0.0004 | 3143.0 | 32.81% | 12493.9 | 31.03% | motif file (matrix) |
pdf |
51 |  | NF1:FOXA1/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer | 1e-4 | -9.256e+00 | 0.0005 | 57.0 | 0.59% | 139.3 | 0.35% | motif file (matrix) |
pdf |
52 |  | OCT4-SOX2-TCF-NANOG((POU/Homeobox/HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer | 1e-3 | -8.997e+00 | 0.0006 | 109.0 | 1.14% | 315.3 | 0.78% | motif file (matrix) |
pdf |
53 |  | Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer | 1e-3 | -8.773e+00 | 0.0007 | 1203.0 | 12.56% | 4577.2 | 11.37% | motif file (matrix) |
pdf |
54 |  | GATA-IR3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer | 1e-3 | -8.230e+00 | 0.0012 | 95.0 | 0.99% | 273.2 | 0.68% | motif file (matrix) |
pdf |
55 |  | CTCF-SatelliteElement/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer | 1e-3 | -8.226e+00 | 0.0012 | 26.0 | 0.27% | 50.3 | 0.12% | motif file (matrix) |
pdf |
56 |  | HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer | 1e-3 | -7.982e+00 | 0.0015 | 347.0 | 3.62% | 1211.1 | 3.01% | motif file (matrix) |
pdf |
57 |  | TR4(NR/DR1)/Hela-TR4-ChIP-Seq(GSE24685)/Homer | 1e-3 | -7.868e+00 | 0.0017 | 114.0 | 1.19% | 343.3 | 0.85% | motif file (matrix) |
pdf |
58 |  | Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer | 1e-3 | -7.689e+00 | 0.0019 | 474.0 | 4.95% | 1709.5 | 4.25% | motif file (matrix) |
pdf |
59 |  | Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer | 1e-3 | -7.503e+00 | 0.0023 | 257.0 | 2.68% | 876.2 | 2.18% | motif file (matrix) |
pdf |
60 |  | E2A(HLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer | 1e-3 | -7.459e+00 | 0.0024 | 1616.0 | 16.87% | 6300.2 | 15.65% | motif file (matrix) |
pdf |
61 |  | PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer | 1e-3 | -7.162e+00 | 0.0031 | 105.0 | 1.10% | 318.4 | 0.79% | motif file (matrix) |
pdf |
62 |  | FOXA1:AR/LNCAP-AR-ChIP-Seq(GSE27824)/Homer | 1e-3 | -7.130e+00 | 0.0032 | 60.0 | 0.63% | 162.7 | 0.40% | motif file (matrix) |
pdf |
63 |  | JunD(bZIP)/K562-JunD-ChIP-Seq/Homer | 1e-3 | -6.987e+00 | 0.0036 | 87.0 | 0.91% | 256.1 | 0.64% | motif file (matrix) |
pdf |
64 |  | BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer | 1e-3 | -6.919e+00 | 0.0038 | 461.0 | 4.81% | 1676.9 | 4.16% | motif file (matrix) |
pdf |
65 |  | SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer | 1e-2 | -6.837e+00 | 0.0041 | 1027.0 | 10.72% | 3935.2 | 9.77% | motif file (matrix) |
pdf |
66 |  | Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer | 1e-2 | -6.737e+00 | 0.0044 | 767.0 | 8.01% | 2894.3 | 7.19% | motif file (matrix) |
pdf |
67 |  | Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer | 1e-2 | -5.980e+00 | 0.0093 | 1102.0 | 11.50% | 4271.2 | 10.61% | motif file (matrix) |
pdf |
68 |  | AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-2 | -5.924e+00 | 0.0097 | 530.0 | 5.53% | 1974.1 | 4.90% | motif file (matrix) |
pdf |
69 |  | EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer | 1e-2 | -5.896e+00 | 0.0098 | 1162.0 | 12.13% | 4518.7 | 11.22% | motif file (matrix) |
pdf |
70 |  | Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer | 1e-2 | -5.820e+00 | 0.0104 | 250.0 | 2.61% | 879.4 | 2.18% | motif file (matrix) |
pdf |
71 |  | c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer | 1e-2 | -5.771e+00 | 0.0108 | 243.0 | 2.54% | 853.5 | 2.12% | motif file (matrix) |
pdf |
72 |  | Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer | 1e-2 | -5.629e+00 | 0.0123 | 2089.0 | 21.81% | 8328.7 | 20.68% | motif file (matrix) |
pdf |
73 |  | GATA-IR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer | 1e-2 | -5.459e+00 | 0.0143 | 58.0 | 0.61% | 168.6 | 0.42% | motif file (matrix) |
pdf |
74 |  | Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer | 1e-2 | -5.450e+00 | 0.0143 | 2089.0 | 21.81% | 8338.1 | 20.71% | motif file (matrix) |
pdf |
75 |  | EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer | 1e-2 | -5.423e+00 | 0.0145 | 234.0 | 2.44% | 825.5 | 2.05% | motif file (matrix) |
pdf |
76 |  | KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer | 1e-2 | -5.392e+00 | 0.0147 | 1562.0 | 16.30% | 6174.2 | 15.33% | motif file (matrix) |
pdf |
77 |  | PRDM1/BMI1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer | 1e-2 | -5.388e+00 | 0.0147 | 444.0 | 4.63% | 1648.9 | 4.09% | motif file (matrix) |
pdf |
78 |  | SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer | 1e-2 | -5.383e+00 | 0.0147 | 4626.0 | 48.29% | 18907.1 | 46.95% | motif file (matrix) |
pdf |
79 |  | NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer | 1e-2 | -5.242e+00 | 0.0165 | 445.0 | 4.65% | 1656.9 | 4.11% | motif file (matrix) |
pdf |
80 |  | VDR(NR/DR3)/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer | 1e-2 | -5.207e+00 | 0.0168 | 190.0 | 1.98% | 660.9 | 1.64% | motif file (matrix) |
pdf |
81 |  | STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer | 1e-2 | -5.164e+00 | 0.0174 | 277.0 | 2.89% | 997.4 | 2.48% | motif file (matrix) |
pdf |
82 |  | ISRE(IRF)/ThioMac-LPS-exp(GSE23622)/HOMER | 1e-2 | -5.067e+00 | 0.0189 | 49.0 | 0.51% | 140.8 | 0.35% | motif file (matrix) |
pdf |
83 |  | Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer | 1e-2 | -4.853e+00 | 0.0231 | 412.0 | 4.30% | 1536.1 | 3.81% | motif file (matrix) |
pdf |
84 |  | Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer | 1e-2 | -4.684e+00 | 0.0271 | 1779.0 | 18.57% | 7104.7 | 17.64% | motif file (matrix) |
pdf |
85 |  | MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer | 1e-2 | -4.664e+00 | 0.0273 | 204.0 | 2.13% | 724.7 | 1.80% | motif file (matrix) |
pdf |
86 |  | Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer | 1e-2 | -4.661e+00 | 0.0273 | 177.0 | 1.85% | 620.7 | 1.54% | motif file (matrix) |
pdf |
87 |  | Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer | 1e-2 | -4.651e+00 | 0.0273 | 453.0 | 4.73% | 1705.1 | 4.23% | motif file (matrix) |
pdf |
88 |  | Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-2 | -4.633e+00 | 0.0273 | 425.0 | 4.44% | 1595.0 | 3.96% | motif file (matrix) |
pdf |