Information for motif29


Reverse Opposite:

p-value:1e-10
log p-value:-2.362e+01
Information Content per bp:1.722
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif0.10%
Number of Background Sequences with motif3.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets103.1 +/- 53.7bp
Average Position of motif in Background74.1 +/- 46.9bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)2.50
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0137.1_Pitx1/Jaspar

Match Rank:1
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CTTTTACTCCTA----
NTTGTTAATCCCTCTNN

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:2
Score:0.60
Offset:2
Orientation:forward strand
Alignment:CTTTTACTCCTA
--GCTAATCC--

PH0138.1_Pitx2/Jaspar

Match Rank:3
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CTTTTACTCCTA---
GNNNATTAATCCCTNCN

MA0467.1_Crx/Jaspar

Match Rank:4
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:CTTTTACTCCTA--
---CTAATCCTCTT

PB0174.1_Sox30_2/Jaspar

Match Rank:5
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----CTTTTACTCCTA
NCGTATTATAATCNTA

MA0111.1_Spz1/Jaspar

Match Rank:6
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CTTTTACTCCTA
GCTGTTACCCT--

PH0130.1_Otx2/Jaspar

Match Rank:7
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CTTTTACTCCTA---
GANNATTAATCCCTNNN

PH0123.1_Obox3/Jaspar

Match Rank:8
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CTTTTACTCCTA----
ATAGTTAATCCCCCNNA

PH0129.1_Otx1/Jaspar

Match Rank:9
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CTTTTACTCCTA---
NNNAATTAATCCCCNCN

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:10
Score:0.56
Offset:4
Orientation:forward strand
Alignment:CTTTTACTCCTA
----TAATCCCN