Information for motif34


Reverse Opposite:

p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.948
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.06%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets100.2 +/- 51.2bp
Average Position of motif in Background97.2 +/- 47.4bp
Strand Bias (log2 ratio + to - strand density)5.1
Multiplicity (# of sites on avg that occur together)5.83
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0158.1_Rhox11_2/Jaspar

Match Rank:1
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--GATGCTGTACAG---
AGGACGCTGTAAAGGGA

PH0157.1_Rhox11_1/Jaspar

Match Rank:2
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GATGCTGTACAG---
AAGACGCTGTAAAGCGA

PB0051.1_Osr2_1/Jaspar

Match Rank:3
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----GATGCTGTACAG
CNNNGCTACTGTANNN

PB0050.1_Osr1_1/Jaspar

Match Rank:4
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----GATGCTGTACAG
TNNTGCTACTGTNNNN

POL009.1_DCE_S_II/Jaspar

Match Rank:5
Score:0.54
Offset:3
Orientation:forward strand
Alignment:GATGCTGTACAG
---GCTGTG---

PB0207.1_Zic3_2/Jaspar

Match Rank:6
Score:0.50
Offset:-3
Orientation:reverse strand
Alignment:---GATGCTGTACAG
NNTCCTGCTGTGNNN

MA0032.1_FOXC1/Jaspar

Match Rank:7
Score:0.50
Offset:7
Orientation:reverse strand
Alignment:GATGCTGTACAG---
-------TACTNNNN

POL010.1_DCE_S_III/Jaspar

Match Rank:8
Score:0.48
Offset:2
Orientation:reverse strand
Alignment:GATGCTGTACAG
--NGCTN-----

PB0205.1_Zic1_2/Jaspar

Match Rank:9
Score:0.48
Offset:-3
Orientation:reverse strand
Alignment:---GATGCTGTACAG
TNTCCTGCTGTGNNG

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:10
Score:0.48
Offset:2
Orientation:reverse strand
Alignment:GATGCTGTACAG--
--TGAGTGACAGSC