Information for motif25


Reverse Opposite:

p-value:1e-15
log p-value:-3.483e+01
Information Content per bp:1.670
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif0.11%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets98.6 +/- 58.1bp
Average Position of motif in Background82.6 +/- 43.7bp
Strand Bias (log2 ratio + to - strand density)-2.2
Multiplicity (# of sites on avg that occur together)2.06
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0152.1_NFATC2/Jaspar

Match Rank:1
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:GGCCCTGAAAAA
-----TGGAAAA

MA0597.1_THAP1/Jaspar

Match Rank:2
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GGCCCTGAAAAA
CTGCCCGCA----

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:3
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GGCCCTGAAAAA---
-TACTGGAAAAAAAA

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:4
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:GGCCCTGAAAAA-
---CSTGGGAAAD

SA0001.1_at_AC_acceptor/Jaspar

Match Rank:5
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GGCCCTGAAAAA---------
-NNCCTGNAAAAAAAAAAAAA

SA0002.1_at_AC_acceptor/Jaspar

Match Rank:6
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:GGCCCTGAAAAA---------
-NNCCTGNAAAAAAAAAAAAA

PAX3:FKHR-fusion(Paired/Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:7
Score:0.53
Offset:1
Orientation:forward strand
Alignment:GGCCCTGAAAAA----
-ACCGTGACTAATTNN

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:8
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---GGCCCTGAAAAA
GGTTGCCATGGCAA-

PH0140.1_Pknox1/Jaspar

Match Rank:9
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--GGCCCTGAAAAA--
AAAGACCTGTCAATCC

MA0028.1_ELK1/Jaspar

Match Rank:10
Score:0.52
Offset:0
Orientation:forward strand
Alignment:GGCCCTGAAAAA
GAGCCGGAAG--