Information for motif13


Reverse Opposite:

p-value:1e-20
log p-value:-4.773e+01
Information Content per bp:1.847
Number of Target Sequences with motif45.0
Percentage of Target Sequences with motif0.47%
Number of Background Sequences with motif30.7
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets92.9 +/- 58.7bp
Average Position of motif in Background111.4 +/- 53.0bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0030.1_FOXF2/Jaspar

Match Rank:1
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---ATTTACGTTG-
NTTGTTTACGTTNN

MA0047.2_Foxa2/Jaspar

Match Rank:2
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-ATTTACGTTG-
TGTTTACTTAGG

MA0148.3_FOXA1/Jaspar

Match Rank:3
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----ATTTACGTTG
TCCATGTTTACTTTG

PH0077.1_Hoxd12/Jaspar

Match Rank:4
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----ATTTACGTTG---
NNNATTTTACGACNNTN

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:5
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-ATTTACGTTG
TGTTTACTTT-

PH0067.1_Hoxc12/Jaspar

Match Rank:6
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----ATTTACGTTG---
GNNNTTTTACGACCTNA

MF0002.1_bZIP_CREB/G-box-like_subclass/Jaspar

Match Rank:7
Score:0.60
Offset:2
Orientation:forward strand
Alignment:ATTTACGTTG
--TGACGT--

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:8
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-ATTTACGTTG
TGTTTACTTT-

PB0015.1_Foxa2_1/Jaspar

Match Rank:9
Score:0.59
Offset:-6
Orientation:reverse strand
Alignment:------ATTTACGTTG-
NNNTTTGTTTACTTTTN

PH0048.1_Hoxa13/Jaspar

Match Rank:10
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---ATTTACGTTG---
ANATTTTACGAGNNNN