Information for motif1


Reverse Opposite:

p-value:1e-211
log p-value:-4.879e+02
Information Content per bp:1.643
Number of Target Sequences with motif2156.0
Percentage of Target Sequences with motif22.51%
Number of Background Sequences with motif4546.2
Percentage of Background Sequences with motif11.29%
Average Position of motif in Targets98.2 +/- 53.9bp
Average Position of motif in Background101.9 +/- 59.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.21
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.94
Offset:0
Orientation:reverse strand
Alignment:TGTTTRCTTA
TGTTTACTTT

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:2
Score:0.94
Offset:0
Orientation:reverse strand
Alignment:TGTTTRCTTA
TGTTTACTTT

MF0005.1_Forkhead_class/Jaspar

Match Rank:3
Score:0.93
Offset:0
Orientation:forward strand
Alignment:TGTTTRCTTA
TGTTTATTT-

MA0148.3_FOXA1/Jaspar

Match Rank:4
Score:0.92
Offset:-4
Orientation:forward strand
Alignment:----TGTTTRCTTA-
TCCATGTTTACTTTG

MA0593.1_FOXP2/Jaspar

Match Rank:5
Score:0.90
Offset:-2
Orientation:reverse strand
Alignment:--TGTTTRCTTA
TNTGTTTACTT-

MA0047.2_Foxa2/Jaspar

Match Rank:6
Score:0.90
Offset:0
Orientation:forward strand
Alignment:TGTTTRCTTA--
TGTTTACTTAGG

Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:7
Score:0.90
Offset:-2
Orientation:reverse strand
Alignment:--TGTTTRCTTA-----
NSTGTTTRCWCAGBNNN

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:8
Score:0.89
Offset:-2
Orientation:forward strand
Alignment:--TGTTTRCTTA
CNTGTTTACATA

FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer

Match Rank:9
Score:0.87
Offset:-3
Orientation:forward strand
Alignment:---TGTTTRCTTA
NYYTGTTTACHN-

MA0481.1_FOXP1/Jaspar

Match Rank:10
Score:0.86
Offset:-3
Orientation:reverse strand
Alignment:---TGTTTRCTTA--
CTTTGTTTACTTTTN