Information for motif36


Reverse Opposite:

p-value:1e-5
log p-value:-1.369e+01
Information Content per bp:1.530
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif0.08%
Number of Background Sequences with motif4.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets101.3 +/- 65.4bp
Average Position of motif in Background113.7 +/- 58.0bp
Strand Bias (log2 ratio + to - strand density)2.7
Multiplicity (# of sites on avg that occur together)2.20
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0040.1_Hmbox1/Jaspar

Match Rank:1
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---TGTAACTAGC----
GANGTTAACTAGTTTNN

PB0159.1_Rfx4_2/Jaspar

Match Rank:2
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--TGTAACTAGC---
NNNGTAACTANGNNA

PB0155.1_Osr2_2/Jaspar

Match Rank:3
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--TGTAACTAGC----
NNTGTAGGTAGCANNT

PH0168.1_Hnf1b/Jaspar

Match Rank:4
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----TGTAACTAGC---
AGCTGTTAACTAGCCGT

PH0045.1_Hoxa1/Jaspar

Match Rank:5
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--TGTAACTAGC----
ACGGTAATTAGCTCAG

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:6
Score:0.64
Offset:2
Orientation:forward strand
Alignment:TGTAACTAGC
--TAATTAGN

PH0049.1_Hoxa2/Jaspar

Match Rank:7
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--TGTAACTAGC----
AAGGTAATTAGCTCAT

PH0081.1_Pdx1/Jaspar

Match Rank:8
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--TGTAACTAGC----
AAGGTAATTAGCTCAT

PH0052.1_Hoxa5/Jaspar

Match Rank:9
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--TGTAACTAGC----
ACGGTAATTAGCTCAG

PH0032.1_Evx2/Jaspar

Match Rank:10
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---TGTAACTAGC----
ANCGCTAATTAGCGGTN