Information for motif17


Reverse Opposite:

p-value:1e-20
log p-value:-4.833e+01
Information Content per bp:1.904
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif0.16%
Number of Background Sequences with motif3.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets105.4 +/- 51.5bp
Average Position of motif in Background112.3 +/- 6.5bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)1.52
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0498.1_Meis1/Jaspar

Match Rank:1
Score:0.75
Offset:-5
Orientation:reverse strand
Alignment:-----AGTGACAGCCGC
NNNTGAGTGACAGCT--

PH0141.1_Pknox2/Jaspar

Match Rank:2
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--AGTGACAGCCGC--
NNATTGACAGGTGCTT

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:3
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--AGTGACAGCCGC
TGAGTGACAGSC--

PH0169.1_Tgif1/Jaspar

Match Rank:4
Score:0.73
Offset:-3
Orientation:forward strand
Alignment:---AGTGACAGCCGC--
GATATTGACAGCTGCGT

PB0151.1_Myf6_2/Jaspar

Match Rank:5
Score:0.71
Offset:0
Orientation:forward strand
Alignment:AGTGACAGCCGC---
AGCAACAGCCGCACC

MA0499.1_Myod1/Jaspar

Match Rank:6
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:AGTGACAGCCGC-
NGNGACAGCTGCN

MA0500.1_Myog/Jaspar

Match Rank:7
Score:0.67
Offset:3
Orientation:forward strand
Alignment:AGTGACAGCCGC--
---GACAGCTGCAG

MA0521.1_Tcf12/Jaspar

Match Rank:8
Score:0.67
Offset:3
Orientation:forward strand
Alignment:AGTGACAGCCGC--
---AACAGCTGCAG

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---AGTGACAGCCGC
NTGATTGACAGN---

MA0522.1_Tcf3/Jaspar

Match Rank:10
Score:0.65
Offset:3
Orientation:forward strand
Alignment:AGTGACAGCCGC--
---CACAGCTGCAG