Information for motif43


Reverse Opposite:

p-value:1e-1
log p-value:-4.550e+00
Information Content per bp:1.914
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif0.13%
Number of Background Sequences with motif23.2
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets102.6 +/- 59.3bp
Average Position of motif in Background110.3 +/- 45.4bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)3.45
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0163.1_Six6_2/Jaspar

Match Rank:1
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--WRGTATATAC-----
ANNNGGATATATCCNNN

POL012.1_TATA-Box/Jaspar

Match Rank:2
Score:0.65
Offset:2
Orientation:forward strand
Alignment:WRGTATATAC-------
--GTATAAAAGGCGGGG

MA0108.2_TBP/Jaspar

Match Rank:3
Score:0.65
Offset:2
Orientation:forward strand
Alignment:WRGTATATAC-------
--GTATAAAAGGCGGGG

MA0033.1_FOXL1/Jaspar

Match Rank:4
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:WRGTATATAC-
---TATGTNTA

PB0080.1_Tbp_1/Jaspar

Match Rank:5
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-WRGTATATAC-----
NANTTATATATAANGN

PB0096.1_Zfp187_1/Jaspar

Match Rank:6
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----WRGTATATAC
TTATTAGTACATAN

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:7
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-WRGTATATAC
AAAGTAAACA-

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:8
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:WRGTATATAC-
AAGGATATNTN

PB0015.1_Foxa2_1/Jaspar

Match Rank:9
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---WRGTATATAC----
AAAAAGTAAACAAAGAC

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:10
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-WRGTATATAC
AAAGTAAACA-