Information for motif29


Reverse Opposite:

p-value:1e-6
log p-value:-1.540e+01
Information Content per bp:1.965
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.06%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets118.2 +/- 47.8bp
Average Position of motif in Background160.0 +/- 18.3bp
Strand Bias (log2 ratio + to - strand density)2.9
Multiplicity (# of sites on avg that occur together)2.83
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0155.1_INSM1/Jaspar

Match Rank:1
Score:0.66
Offset:3
Orientation:forward strand
Alignment:AGCTGTGAGGGG---
---TGTCAGGGGGCG

POL009.1_DCE_S_II/Jaspar

Match Rank:2
Score:0.62
Offset:1
Orientation:forward strand
Alignment:AGCTGTGAGGGG
-GCTGTG-----

MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer

Match Rank:3
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-AGCTGTGAGGGG
CAGCTGTT-----

MA0522.1_Tcf3/Jaspar

Match Rank:4
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----AGCTGTGAGGGG
NTGCAGCTGTG-----

PH0158.1_Rhox11_2/Jaspar

Match Rank:5
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----AGCTGTGAGGGG-
AGGACGCTGTAAAGGGA

Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer

Match Rank:6
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--AGCTGTGAGGGG
ACAGCTGTTV----

Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:7
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----AGCTGTGAGGGG
NAHCAGCTGD------

MA0521.1_Tcf12/Jaspar

Match Rank:8
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----AGCTGTGAGGGG
NNGCAGCTGTT-----

PB0025.1_Glis2_1/Jaspar

Match Rank:9
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:AGCTGTGAGGGG------
--NTNTGGGGGGTCNNNA

MA0057.1_MZF1_5-13/Jaspar

Match Rank:10
Score:0.59
Offset:5
Orientation:forward strand
Alignment:AGCTGTGAGGGG---
-----GGAGGGGGAA