Information for motif2


Reverse Opposite:

p-value:1e-114
log p-value:-2.646e+02
Information Content per bp:1.542
Number of Target Sequences with motif3269.0
Percentage of Target Sequences with motif22.82%
Number of Background Sequences with motif5498.2
Percentage of Background Sequences with motif15.52%
Average Position of motif in Targets99.7 +/- 54.8bp
Average Position of motif in Background99.6 +/- 58.6bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.26
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer

Match Rank:1
Score:0.97
Offset:0
Orientation:reverse strand
Alignment:CTAATTARHH
YTAATTAVHT

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:2
Score:0.96
Offset:-1
Orientation:reverse strand
Alignment:-CTAATTARHH
NCTAATTA---

PH0133.1_Pax7/Jaspar

Match Rank:3
Score:0.92
Offset:-5
Orientation:reverse strand
Alignment:-----CTAATTARHH--
NNNTNCTAATTAGNTCN

PB0031.1_Hoxa3_1/Jaspar

Match Rank:4
Score:0.92
Offset:-1
Orientation:reverse strand
Alignment:-CTAATTARHH---
GTTAATTANCTCNN

PH0160.1_Shox2/Jaspar

Match Rank:5
Score:0.92
Offset:-4
Orientation:forward strand
Alignment:----CTAATTARHH---
CGCGTTAATTAATTGTG

PH0131.1_Pax4/Jaspar

Match Rank:6
Score:0.91
Offset:-4
Orientation:forward strand
Alignment:----CTAATTARHH---
TGAACTAATTAGCCCAC

PH0050.1_Hoxa3/Jaspar

Match Rank:7
Score:0.91
Offset:-1
Orientation:reverse strand
Alignment:-CTAATTARHH---
ACTAATTANCNCNA

PH0074.1_Hoxd1/Jaspar

Match Rank:8
Score:0.91
Offset:-4
Orientation:forward strand
Alignment:----CTAATTARHH---
TAAACTAATTAGCTGTA

PH0001.1_Alx3/Jaspar

Match Rank:9
Score:0.91
Offset:-4
Orientation:forward strand
Alignment:----CTAATTARHH---
TAAACTAATTAGCTGAG

PH0155.1_Prrx2/Jaspar

Match Rank:10
Score:0.90
Offset:-5
Orientation:reverse strand
Alignment:-----CTAATTARHH--
NTTCGCTAATTAGCTNT