Information for motif38


Reverse Opposite:

p-value:1e-3
log p-value:-9.112e+00
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.04%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets88.2 +/- 55.3bp
Average Position of motif in Background149.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)3.7
Multiplicity (# of sites on avg that occur together)3.50
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired/Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-CAGGCAACCAGG--
SCAGYCADGCATGAC

PB0159.1_Rfx4_2/Jaspar

Match Rank:2
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CAGGCAACCAGG---
NNNGTAACTANGNNA

PAX5(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CAGGCAACCAGG---
GCAGCCAAGCGTGACN

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:4
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CAGGCAACCAGG
AAGGCAAGTGT-

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer

Match Rank:5
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---CAGGCAACCAGG
TBGCACGCAA-----

EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer

Match Rank:6
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CAGGCAACCAGG
NACAGGAAAT----

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:7
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---CAGGCAACCAGG
TGGCAGNCTGCCAG-

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:8
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--CAGGCAACCAGG
NACAGGAAAT----

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:9
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-CAGGCAACCAGG
BCAGACWA-----

PB0158.1_Rfx3_2/Jaspar

Match Rank:10
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----CAGGCAACCAGG-------
NNTNGNNGTAACCAAGNNNNAGN