Information for motif23


Reverse Opposite:

p-value:1e-10
log p-value:-2.492e+01
Information Content per bp:1.903
Number of Target Sequences with motif275.0
Percentage of Target Sequences with motif2.87%
Number of Background Sequences with motif755.7
Percentage of Background Sequences with motif1.88%
Average Position of motif in Targets95.9 +/- 54.8bp
Average Position of motif in Background96.2 +/- 56.6bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0078.1_Sox17/Jaspar

Match Rank:1
Score:0.84
Offset:2
Orientation:reverse strand
Alignment:AGGACAAT---
--GACAATGNN

MA0515.1_Sox6/Jaspar

Match Rank:2
Score:0.80
Offset:0
Orientation:reverse strand
Alignment:AGGACAAT--
AAAACAATGG

PB0072.1_Sox5_1/Jaspar

Match Rank:3
Score:0.78
Offset:-3
Orientation:forward strand
Alignment:---AGGACAAT-----
TTTAGAACAATAAAAT

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:4
Score:0.78
Offset:0
Orientation:reverse strand
Alignment:AGGACAAT--
RNAACAATGG

PB0183.1_Sry_2/Jaspar

Match Rank:5
Score:0.78
Offset:-4
Orientation:forward strand
Alignment:----AGGACAAT-----
TCACGGAACAATAGGTG

PB0063.1_Sox13_1/Jaspar

Match Rank:6
Score:0.77
Offset:-3
Orientation:forward strand
Alignment:---AGGACAAT-----
TTAAGAACAATAAATT

PB0062.1_Sox12_1/Jaspar

Match Rank:7
Score:0.77
Offset:-4
Orientation:reverse strand
Alignment:----AGGACAAT--
NTTNAGAACAATTA

PB0173.1_Sox21_2/Jaspar

Match Rank:8
Score:0.77
Offset:-4
Orientation:reverse strand
Alignment:----AGGACAAT-----
NNNNNGAACAATTGANN

PB0067.1_Sox18_1/Jaspar

Match Rank:9
Score:0.76
Offset:-4
Orientation:reverse strand
Alignment:----AGGACAAT----
NNTNANAACAATTNNA

PB0070.1_Sox30_1/Jaspar

Match Rank:10
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--AGGACAAT------
AATGAACAATGGAATT