Information for motif4


Reverse Opposite:

p-value:1e-75
log p-value:-1.739e+02
Information Content per bp:1.895
Number of Target Sequences with motif1195.0
Percentage of Target Sequences with motif8.34%
Number of Background Sequences with motif1676.4
Percentage of Background Sequences with motif4.73%
Average Position of motif in Targets100.7 +/- 54.5bp
Average Position of motif in Background99.0 +/- 59.2bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.96
Offset:-2
Orientation:reverse strand
Alignment:--ATGCAAAT
TTATGCAAAT

MA0507.1_POU2F2/Jaspar

Match Rank:2
Score:0.95
Offset:-2
Orientation:reverse strand
Alignment:--ATGCAAAT---
ATATGCAAATNNN

Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:3
Score:0.93
Offset:-2
Orientation:forward strand
Alignment:--ATGCAAAT
ATATGCAAAT

PH0145.1_Pou2f3/Jaspar

Match Rank:4
Score:0.93
Offset:-4
Orientation:forward strand
Alignment:----ATGCAAAT----
TTGTATGCAAATTAGA

PH0144.1_Pou2f2/Jaspar

Match Rank:5
Score:0.93
Offset:-4
Orientation:forward strand
Alignment:----ATGCAAAT----
TTGTATGCAAATTAGA

OCT4-SOX2-TCF-NANOG((POU/Homeobox/HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.80
Offset:-7
Orientation:reverse strand
Alignment:-------ATGCAAAT
CATTGTTATGCAAAT

MA0142.1_Pou5f1::Sox2/Jaspar

Match Rank:7
Score:0.76
Offset:-7
Orientation:forward strand
Alignment:-------ATGCAAAT
CTTTGTTATGCAAAT

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer

Match Rank:8
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-ATGCAAAT-
AATGGAAAAT

PH0148.1_Pou3f3/Jaspar

Match Rank:9
Score:0.65
Offset:-6
Orientation:reverse strand
Alignment:------ATGCAAAT---
TNNATTATGCATANNTT

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----ATGCAAAT
NATGTTGCAA--