Information for motif11


Reverse Opposite:

p-value:1e-29
log p-value:-6.879e+01
Information Content per bp:1.979
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif0.15%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets103.1 +/- 41.1bp
Average Position of motif in Background152.0 +/- 6.6bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0124.1_NKX3-1/Jaspar

Match Rank:1
Score:0.67
Offset:2
Orientation:forward strand
Alignment:GAATACTAAC
--ATACTTA-

MA0046.1_HNF1A/Jaspar

Match Rank:2
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---GAATACTAAC-
GNTAATNATTAACC

PB0106.1_Arid5a_2/Jaspar

Match Rank:3
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----GAATACTAAC---
CATACAATACGAAATAA

MA0032.1_FOXC1/Jaspar

Match Rank:4
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:GAATACTAAC-
---TACTNNNN

PB0119.1_Foxa2_2/Jaspar

Match Rank:5
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GAATACTAAC------
-AAAAATAACAAACGG

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:6
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:GAATACTAAC---
--NNACTTACCTN

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:7
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GAATACTAAC
AAGCACTTAA

PB0122.1_Foxk1_2/Jaspar

Match Rank:8
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GAATACTAAC----
CAAACAACAACACCT

PB0002.1_Arid5a_1/Jaspar

Match Rank:9
Score:0.53
Offset:-5
Orientation:reverse strand
Alignment:-----GAATACTAAC
NNTNNCAATATTAG-

PB0194.1_Zbtb12_2/Jaspar

Match Rank:10
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-GAATACTAAC----
AGNGTTCTAATGANN