Information for motif35


Reverse Opposite:

p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.931
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.06%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets110.8 +/- 51.7bp
Average Position of motif in Background129.5 +/- 20.3bp
Strand Bias (log2 ratio + to - strand density)2.1
Multiplicity (# of sites on avg that occur together)2.67
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0130.1_Gm397_2/Jaspar

Match Rank:1
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CTCCGGACAAAC----
AGCGGCACACACGCAA

MA0003.2_TFAP2A/Jaspar

Match Rank:2
Score:0.56
Offset:-6
Orientation:forward strand
Alignment:------CTCCGGACAAAC
CATTGCCTCAGGGCA---

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--CTCCGGACAAAC
GCCTCAGGGCAT--

MA0028.1_ELK1/Jaspar

Match Rank:4
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CTCCGGACAAAC
GAGCCGGAAG---

POL007.1_BREd/Jaspar

Match Rank:5
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:CTCCGGACAAAC
-----NANANAC

MA0514.1_Sox3/Jaspar

Match Rank:6
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:CTCCGGACAAAC-
---AAAACAAAGG

POL013.1_MED-1/Jaspar

Match Rank:7
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-CTCCGGACAAAC
GCTCCG-------

Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:8
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----CTCCGGACAAAC-
NNNVCTGWGYAAACASN

Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer

Match Rank:9
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:CTCCGGACAAAC
-DCCGGAARYN-

PB0060.1_Smad3_1/Jaspar

Match Rank:10
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---CTCCGGACAAAC--
CAAATCCAGACATCACA