Information for motif3


Reverse Opposite:

p-value:1e-65
log p-value:-1.514e+02
Information Content per bp:1.668
Number of Target Sequences with motif541.0
Percentage of Target Sequences with motif5.65%
Number of Background Sequences with motif995.4
Percentage of Background Sequences with motif2.47%
Average Position of motif in Targets100.0 +/- 62.9bp
Average Position of motif in Background97.7 +/- 56.0bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.91
Offset:-1
Orientation:reverse strand
Alignment:-CCACCAGGKGGC-------
GCCASCAGGGGGCGCYVNNG

MA0139.1_CTCF/Jaspar

Match Rank:2
Score:0.89
Offset:-3
Orientation:forward strand
Alignment:---CCACCAGGKGGC----
TGGCCACCAGGGGGCGCTA

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer

Match Rank:3
Score:0.88
Offset:-3
Orientation:reverse strand
Alignment:---CCACCAGGKGGC-----
TGGCCACCAGGTGGCACTNT

MA0461.1_Atoh1/Jaspar

Match Rank:4
Score:0.67
Offset:4
Orientation:forward strand
Alignment:CCACCAGGKGGC
----CAGATGGC

PB0101.1_Zic1_1/Jaspar

Match Rank:5
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-CCACCAGGKGGC-
CCCCCCCGGGGGNN

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:6
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:CCACCAGGKGGC
--AACAGATGGC

Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CCACCAGGKGGC
CACAGCAGGGGG-

PB0103.1_Zic3_1/Jaspar

Match Rank:8
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CCACCAGGKGGC-
CCCCCCCGGGGGGGT

PB0102.1_Zic2_1/Jaspar

Match Rank:9
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CCACCAGGKGGC-
CCCCCCCGGGGGGGT

E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:CCACCAGGKGGC
--NNCAGGTGNN