Information for motif27


Reverse Opposite:

p-value:1e-38
log p-value:-8.913e+01
Information Content per bp:1.859
Number of Target Sequences with motif4593.0
Percentage of Target Sequences with motif16.84%
Number of Background Sequences with motif3788.0
Percentage of Background Sequences with motif14.02%
Average Position of motif in Targets100.0 +/- 55.3bp
Average Position of motif in Background99.7 +/- 55.9bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.82
Offset:-2
Orientation:reverse strand
Alignment:--TCCTACTG--
CCCCCTGCTGTG

PB0205.1_Zic1_2/Jaspar

Match Rank:2
Score:0.80
Offset:-2
Orientation:reverse strand
Alignment:--TCCTACTG-----
TNTCCTGCTGTGNNG

PB0206.1_Zic2_2/Jaspar

Match Rank:3
Score:0.78
Offset:-2
Orientation:reverse strand
Alignment:--TCCTACTG-----
TCNCCTGCTGNGNNN

PB0207.1_Zic3_2/Jaspar

Match Rank:4
Score:0.77
Offset:-2
Orientation:reverse strand
Alignment:--TCCTACTG-----
NNTCCTGCTGTGNNN

PB0050.1_Osr1_1/Jaspar

Match Rank:5
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---TCCTACTG-----
TNNTGCTACTGTNNNN

PB0181.1_Spdef_2/Jaspar

Match Rank:6
Score:0.66
Offset:-7
Orientation:forward strand
Alignment:-------TCCTACTG-
GATAACATCCTAGTAG

MA0461.1_Atoh1/Jaspar

Match Rank:7
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:TCCTACTG
GCCATCTG

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:8
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---TCCTACTG
ACATCCTGNT-

PB0051.1_Osr2_1/Jaspar

Match Rank:9
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---TCCTACTG-----
CNNNGCTACTGTANNN

MA0139.1_CTCF/Jaspar

Match Rank:10
Score:0.63
Offset:-7
Orientation:reverse strand
Alignment:-------TCCTACTG----
TAGCGCCCCCTGGTGGCCA