p-value: | 1e-26 |
log p-value: | -6.073e+01 |
Information Content per bp: | 1.647 |
Number of Target Sequences with motif | 633.0 |
Percentage of Target Sequences with motif | 6.61% |
Number of Background Sequences with motif | 1702.4 |
Percentage of Background Sequences with motif | 4.23% |
Average Position of motif in Targets | 99.3 +/- 53.9bp |
Average Position of motif in Background | 98.1 +/- 56.9bp |
Strand Bias (log2 ratio + to - strand density) | 0.1 |
Multiplicity (# of sites on avg that occur together) | 1.13 |
Motif File: | file (matrix) reverse opposite |
PDF Format Logos: | forward logo reverse opposite |
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer
Match Rank: | 1 |
Score: | 0.81 |
Offset: | 0 |
Orientation: | reverse strand |
Alignment: | ACTAATTACA NCTAATTA-- |
|

|
|
PH0039.1_Mnx1/Jaspar
Match Rank: | 2 |
Score: | 0.80 |
Offset: | -4 |
Orientation: | reverse strand |
Alignment: | ----ACTAATTACA-- NNNCACTAATTANTNN |
|

|
|
PH0050.1_Hoxa3/Jaspar
Match Rank: | 3 |
Score: | 0.78 |
Offset: | 0 |
Orientation: | reverse strand |
Alignment: | ACTAATTACA---- ACTAATTANCNCNA |
|

|
|
PH0081.1_Pdx1/Jaspar
Match Rank: | 4 |
Score: | 0.78 |
Offset: | -4 |
Orientation: | reverse strand |
Alignment: | ----ACTAATTACA-- NTGNGCTAATTACCNN |
|

|
|
PH0175.1_Vax2/Jaspar
Match Rank: | 5 |
Score: | 0.77 |
Offset: | -4 |
Orientation: | forward strand |
Alignment: | ----ACTAATTACA-- GTGCACTAATTAAGAC |
|

|
|
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer
Match Rank: | 6 |
Score: | 0.77 |
Offset: | 1 |
Orientation: | reverse strand |
Alignment: | ACTAATTACA- -YTAATTAVHT |
|

|
|
PH0045.1_Hoxa1/Jaspar
Match Rank: | 7 |
Score: | 0.76 |
Offset: | -4 |
Orientation: | forward strand |
Alignment: | ----ACTAATTACA-- CTGAGCTAATTACCGT |
|

|
|
PH0020.1_Dlx1/Jaspar
Match Rank: | 8 |
Score: | 0.76 |
Offset: | 0 |
Orientation: | reverse strand |
Alignment: | ACTAATTACA---- ATTAATTANCTCAN |
|

|
|
MA0125.1_Nobox/Jaspar
Match Rank: | 9 |
Score: | 0.76 |
Offset: | 0 |
Orientation: | reverse strand |
Alignment: | ACTAATTACA ACCAATTA-- |
|

|
|
PH0031.1_Evx1/Jaspar
Match Rank: | 10 |
Score: | 0.76 |
Offset: | -4 |
Orientation: | reverse strand |
Alignment: | ----ACTAATTACA--- NNNCACTAATTAGTNNT |
|

|
|