p-value: | 1e-3 |
log p-value: | -9.112e+00 |
Information Content per bp: | 1.530 |
Number of Target Sequences with motif | 4.0 |
Percentage of Target Sequences with motif | 0.04% |
Number of Background Sequences with motif | 1.0 |
Percentage of Background Sequences with motif | 0.00% |
Average Position of motif in Targets | 88.2 +/- 55.3bp |
Average Position of motif in Background | 149.0 +/- 0.0bp |
Strand Bias (log2 ratio + to - strand density) | 3.7 |
Multiplicity (# of sites on avg that occur together) | 3.50 |
Motif File: | file (matrix) reverse opposite |
PDF Format Logos: | forward logo reverse opposite |
Pax8(Paired/Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer
Match Rank: | 1 |
Score: | 0.68 |
Offset: | -1 |
Orientation: | reverse strand |
Alignment: | -CAGGCAACCAGG-- SCAGYCADGCATGAC |
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PB0159.1_Rfx4_2/Jaspar
Match Rank: | 2 |
Score: | 0.63 |
Offset: | 0 |
Orientation: | reverse strand |
Alignment: | CAGGCAACCAGG--- NNNGTAACTANGNNA |
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PAX5(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer
Match Rank: | 3 |
Score: | 0.59 |
Offset: | -1 |
Orientation: | forward strand |
Alignment: | -CAGGCAACCAGG--- GCAGCCAAGCGTGACN |
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SD0002.1_at_AC_acceptor/Jaspar
Match Rank: | 4 |
Score: | 0.58 |
Offset: | 0 |
Orientation: | forward strand |
Alignment: | CAGGCAACCAGG AAGGCAAGTGT- |
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Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer
Match Rank: | 5 |
Score: | 0.57 |
Offset: | -3 |
Orientation: | forward strand |
Alignment: | ---CAGGCAACCAGG TBGCACGCAA----- |
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EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer
Match Rank: | 6 |
Score: | 0.56 |
Offset: | -2 |
Orientation: | forward strand |
Alignment: | --CAGGCAACCAGG NACAGGAAAT---- |
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Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer
Match Rank: | 7 |
Score: | 0.56 |
Offset: | -3 |
Orientation: | reverse strand |
Alignment: | ---CAGGCAACCAGG TGGCAGNCTGCCAG- |
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EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer
Match Rank: | 8 |
Score: | 0.55 |
Offset: | -2 |
Orientation: | reverse strand |
Alignment: | --CAGGCAACCAGG NACAGGAAAT---- |
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Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer
Match Rank: | 9 |
Score: | 0.54 |
Offset: | -1 |
Orientation: | reverse strand |
Alignment: | -CAGGCAACCAGG BCAGACWA----- |
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PB0158.1_Rfx3_2/Jaspar
Match Rank: | 10 |
Score: | 0.54 |
Offset: | -4 |
Orientation: | reverse strand |
Alignment: | ----CAGGCAACCAGG------- NNTNGNNGTAACCAAGNNNNAGN |
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