Information for motif10


Reverse Opposite:

p-value:1e-26
log p-value:-6.073e+01
Information Content per bp:1.647
Number of Target Sequences with motif633.0
Percentage of Target Sequences with motif6.61%
Number of Background Sequences with motif1702.4
Percentage of Background Sequences with motif4.23%
Average Position of motif in Targets99.3 +/- 53.9bp
Average Position of motif in Background98.1 +/- 56.9bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.13
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:1
Score:0.81
Offset:0
Orientation:reverse strand
Alignment:ACTAATTACA
NCTAATTA--

PH0039.1_Mnx1/Jaspar

Match Rank:2
Score:0.80
Offset:-4
Orientation:reverse strand
Alignment:----ACTAATTACA--
NNNCACTAATTANTNN

PH0050.1_Hoxa3/Jaspar

Match Rank:3
Score:0.78
Offset:0
Orientation:reverse strand
Alignment:ACTAATTACA----
ACTAATTANCNCNA

PH0081.1_Pdx1/Jaspar

Match Rank:4
Score:0.78
Offset:-4
Orientation:reverse strand
Alignment:----ACTAATTACA--
NTGNGCTAATTACCNN

PH0175.1_Vax2/Jaspar

Match Rank:5
Score:0.77
Offset:-4
Orientation:forward strand
Alignment:----ACTAATTACA--
GTGCACTAATTAAGAC

Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer

Match Rank:6
Score:0.77
Offset:1
Orientation:reverse strand
Alignment:ACTAATTACA-
-YTAATTAVHT

PH0045.1_Hoxa1/Jaspar

Match Rank:7
Score:0.76
Offset:-4
Orientation:forward strand
Alignment:----ACTAATTACA--
CTGAGCTAATTACCGT

PH0020.1_Dlx1/Jaspar

Match Rank:8
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:ACTAATTACA----
ATTAATTANCTCAN

MA0125.1_Nobox/Jaspar

Match Rank:9
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:ACTAATTACA
ACCAATTA--

PH0031.1_Evx1/Jaspar

Match Rank:10
Score:0.76
Offset:-4
Orientation:reverse strand
Alignment:----ACTAATTACA---
NNNCACTAATTAGTNNT