Information for motif28


Reverse Opposite:

p-value:1e-6
log p-value:-1.595e+01
Information Content per bp:1.530
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif0.14%
Number of Background Sequences with motif8.4
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets76.3 +/- 69.0bp
Average Position of motif in Background186.0 +/- 5.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0594.1_Hoxa9/Jaspar

Match Rank:1
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-ACATAACTCA
GCCATAAATCA

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:2
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--ACATAACTCA
GGCCATAAATCA

MA0485.1_Hoxc9/Jaspar

Match Rank:3
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--ACATAACTCA-
GGCCATAAATCAC

MA0491.1_JUND/Jaspar

Match Rank:4
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:ACATAACTCA--
-NATGAGTCACN

MA0476.1_FOS/Jaspar

Match Rank:5
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:ACATAACTCA--
-NATGAGTCANN

BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer

Match Rank:6
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:ACATAACTCA--
--ATGASTCATH

AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:7
Score:0.66
Offset:2
Orientation:forward strand
Alignment:ACATAACTCA--
--ATGACTCATC

MA0462.1_BATF::JUN/Jaspar

Match Rank:8
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-ACATAACTCA
GAAATGACTCA

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:9
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--ACATAACTCA
GGCCATAAATCA

PB0176.1_Sox5_2/Jaspar

Match Rank:10
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--ACATAACTCA---
TATCATAATTAAGGA