Information for motif9


Reverse Opposite:

p-value:1e-87
log p-value:-2.015e+02
Information Content per bp:1.758
Number of Target Sequences with motif63.0
Percentage of Target Sequences with motif0.23%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets95.4 +/- 59.2bp
Average Position of motif in Background114.4 +/- 14.6bp
Strand Bias (log2 ratio + to - strand density)-3.6
Multiplicity (# of sites on avg that occur together)2.51
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:1
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GGGATWACTGTG
NGGGATTA-----

PH0035.1_Gsc/Jaspar

Match Rank:2
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----GGGATWACTGTG-
NNAAGGGATTAACGANT

PH0129.1_Otx1/Jaspar

Match Rank:3
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----GGGATWACTGTG-
AGAGGGGATTAATTTAT

PH0138.1_Pitx2/Jaspar

Match Rank:4
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----GGGATWACTGTG-
TGAAGGGATTAATCATC

PH0130.1_Otx2/Jaspar

Match Rank:5
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----GGGATWACTGTG-
TGTAGGGATTAATTGTC

POL009.1_DCE_S_II/Jaspar

Match Rank:6
Score:0.58
Offset:6
Orientation:forward strand
Alignment:GGGATWACTGTG
------GCTGTG

PH0025.1_Dmbx1/Jaspar

Match Rank:7
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----GGGATWACTGTG
TGAACCGGATTAATGAA

PB0099.1_Zfp691_1/Jaspar

Match Rank:8
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---GGGATWACTGTG--
NNNNTGAGCACTGTNNG

PH0126.1_Obox6/Jaspar

Match Rank:9
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----GGGATWACTGTG
AAAAACGGATTATTG--

PH0015.1_Crx/Jaspar

Match Rank:10
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----GGGATWACTGTG
CGTTGGGGATTAGCCT-