DatasetOIS-Specific_collapsed_to_symbols.Cliques.cls#OIS_versus_Pro
PhenotypeCliques.cls#OIS_versus_Pro
Upregulated in classPro
GeneSetVECCHI_GASTRIC_CANCER_EARLY_UP
Enrichment Score (ES)-0.32027802
Normalized Enrichment Score (NES)-1.2629427
Nominal p-value0.0
FDR q-value0.5554113
FWER p-Value1.0
Table: GSEA Results Summary

Trouble saving image
java.lang.IllegalArgumentException: Must be finite. at jfreechart@1.5.0/org.jfree.chart.axis.NumberTickUnitSource.getCeilingTickUnit(NumberTickUnitSource.java:114) at jfreechart@1.5.0/org.jfree.chart.axis.NumberAxis.selectVerticalAutoTickUnit(NumberAxis.java:896) at jfreechart@1.5.0/org.jfree.chart.axis.NumberAxis.selectAutoTickUnit(NumberAxis.java:828) at jfreechart@1.5.0/org.jfree.chart.axis.NumberAxis.refreshTicksVertical(NumberAxis.java:1049) at jfreechart@1.5.0/org.jfree.chart.axis.NumberAxis.refreshTicks(NumberAxis.java:929) at jfreechart@1.5.0/org.jfree.chart.axis.ValueAxis.reserveSpace(ValueAxis.java:806) at jfreechart@1.5.0/org.jfree.chart.plot.XYPlot.calculateRangeAxisSpace(XYPlot.java:3077) at jfreechart@1.5.0/org.jfree.chart.plot.CombinedDomainXYPlot.calculateAxisSpace(CombinedDomainXYPlot.java:447) at jfreechart@1.5.0/org.jfree.chart.plot.CombinedDomainXYPlot.draw(CombinedDomainXYPlot.java:482) at jfreechart@1.5.0/org.jfree.chart.JFreeChart.draw(JFreeChart.java:1286) at jfreechart@1.5.0/org.jfree.chart.JFreeChart.createBufferedImage(JFreeChart.java:1453) at jfreechart@1.5.0/org.jfree.chart.JFreeChart.createBufferedImage(JFreeChart.java:1434) at jfreechart@1.5.0/org.jfree.chart.ChartUtils.writeChartAsPNG(ChartUtils.java:184) at jfreechart@1.5.0/org.jfree.chart.ChartUtils.saveChartAsPNG(ChartUtils.java:310) at jfreechart@1.5.0/org.jfree.chart.ChartUtils.saveChartAsPNG(ChartUtils.java:285) at org.gsea_msigdb.gsea/edu.mit.broad.genome.charts.XChartImpl.saveAsPNG(XChartImpl.java:114) at org.gsea_msigdb.gsea/edu.mit.broad.genome.reports.api.PicFile.save(PicFile.java:149) at org.gsea_msigdb.gsea/edu.mit.broad.genome.reports.api.PicFile.createIMG(PicFile.java:118) at org.gsea_msigdb.gsea/edu.mit.broad.genome.reports.pages.HtmlPage.addChart(HtmlPage.java:206) at org.gsea_msigdb.gsea/edu.mit.broad.genome.reports.pages.HtmlPage.addChart(HtmlPage.java:213) at org.gsea_msigdb.gsea/edu.mit.broad.genome.reports.EnrichmentReports.createReport(EnrichmentReports.java:785) at org.gsea_msigdb.gsea/edu.mit.broad.genome.reports.EnrichmentReports.createReport(EnrichmentReports.java:613) at org.gsea_msigdb.gsea/edu.mit.broad.genome.reports.EnrichmentReports.createGseaLikeReport(EnrichmentReports.java:339) at org.gsea_msigdb.gsea/edu.mit.broad.genome.reports.EnrichmentReports.createGseaLikeReport(EnrichmentReports.java:179) at org.gsea_msigdb.gsea/xtools.gsea.AbstractGsea2Tool.execute_one_with_reporting(AbstractGsea2Tool.java:124) at org.gsea_msigdb.gsea/xtools.gsea.Gsea.execute(Gsea.java:165) at org.gsea_msigdb.gsea/edu.mit.broad.xbench.tui.TaskManager$ToolRunnable.run(TaskManager.java:435) at java.base/java.lang.Thread.run(Unknown Source)

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1E2F7E2F transcription factor 7 [Source:HGNC Symbol;Acc:HGNC:23820]362.5190.0874No
2FERMT1fermitin family member 1 [Source:HGNC Symbol;Acc:HGNC:15889]382.4790.2309No
3PMEPA1"prostate transmembrane protein, androgen induced 1 [Source:HGNC Symbol;Acc:HGNC:14107]"1010.9470.1826No
4RBM19RNA binding motif protein 19 [Source:HGNC Symbol;Acc:HGNC:29098]1230.7570.1918No
5DCAF13DDB1 and CUL4 associated factor 13 [Source:HGNC Symbol;Acc:HGNC:24535]1830.4340.1184No
6TIMM13translocase of inner mitochondrial membrane 13 [Source:HGNC Symbol;Acc:HGNC:11816]1940.4000.1251No
7KRT18keratin 18 [Source:HGNC Symbol;Acc:HGNC:6430]2180.3220.1054No
8RUNX1RUNX family transcription factor 1 [Source:HGNC Symbol;Acc:HGNC:10471]2360.2770.0932No
9CAMK2N1calcium/calmodulin dependent protein kinase II inhibitor 1 [Source:HGNC Symbol;Acc:HGNC:24190]3060.104-0.0163No
10PSMA7proteasome 20S subunit alpha 7 [Source:HGNC Symbol;Acc:HGNC:9536]3430.007-0.0762No
11MTHFD1Lmethylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like [Source:HGNC Symbol;Acc:HGNC:21055]423-0.271-0.1926No
12MRPS28mitochondrial ribosomal protein S28 [Source:HGNC Symbol;Acc:HGNC:14513]456-0.380-0.2239No
13PFDN4prefoldin subunit 4 [Source:HGNC Symbol;Acc:HGNC:8868]467-0.415-0.2163No
14MRPL13mitochondrial ribosomal protein L13 [Source:HGNC Symbol;Acc:HGNC:14278]485-0.496-0.2158No
15XRCC4X-ray repair cross complementing 4 [Source:HGNC Symbol;Acc:HGNC:12831]533-0.745-0.2509Yes
16SMARCE1"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 [Source:HGNC Symbol;Acc:HGNC:11109]"561-0.930-0.2416Yes
17DLEU2deleted in lymphocytic leukemia 2 [Source:HGNC Symbol;Acc:HGNC:13748]609-2.611-0.1672Yes
18CENPFcentromere protein F [Source:HGNC Symbol;Acc:HGNC:1857]611-2.9670.0050Yes
Table: GSEA details [plain text format]



Fig 2: VECCHI_GASTRIC_CANCER_EARLY_UP   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: VECCHI_GASTRIC_CANCER_EARLY_UP: Random ES distribution   
Gene set null distribution of ES for VECCHI_GASTRIC_CANCER_EARLY_UP