Information for motif12


Reverse Opposite:

p-value:1e-20
log p-value:-4.782e+01
Information Content per bp:1.780
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif10.15%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.63%
Average Position of motif in Targets134.7 +/- 97.7bp
Average Position of motif in Background161.3 +/- 46.3bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0007.2_AR/Jaspar

Match Rank:1
Score:0.66
Offset:0
Orientation:forward strand
Alignment:AAGAAGATACTG---
AAGAACAGAATGTTC

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:2
Score:0.63
Offset:0
Orientation:forward strand
Alignment:AAGAAGATACTG---
VAGRACAKNCTGTBC

MA0517.1_STAT2::STAT1/Jaspar

Match Rank:3
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--AAGAAGATACTG-
GGAAANTGAAACTNA

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:4
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:AAGAAGATACTG----
-AGATGCTRCTRCCHT

GRE/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.57
Offset:0
Orientation:forward strand
Alignment:AAGAAGATACTG---
VAGRACAKWCTGTYC

ISRE(IRF)/ThioMac-LPS-exp(GSE23622)/HOMER

Match Rank:6
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-AAGAAGATACTG
GAAACTGAAACT-

PB0033.1_Irf3_1/Jaspar

Match Rank:7
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--AAGAAGATACTG
GAGAACCGAAACTG

ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:8
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:AAGAAGATACTG----
NAGAACAGNCTGTNCT

ETS:E-box/HPC7-Scl-ChIP-Seq(GSE22178)/Homer

Match Rank:9
Score:0.53
Offset:0
Orientation:forward strand
Alignment:AAGAAGATACTG
AGGAAACAGCTG

bZIP:IRF/Th17-BatF-ChIP-Seq(GSE39756)/Homer

Match Rank:10
Score:0.53
Offset:-6
Orientation:reverse strand
Alignment:------AAGAAGATACTG
WNAGTCADAVTGAAACTN