Information for motif17


Reverse Opposite:

p-value:1e-17
log p-value:-4.001e+01
Information Content per bp:1.738
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif11.17%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif0.97%
Average Position of motif in Targets151.0 +/- 78.0bp
Average Position of motif in Background165.0 +/- 45.7bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.74
Offset:1
Orientation:forward strand
Alignment:TTAGTCTK-
-TWGTCTGV

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.64
Offset:1
Orientation:forward strand
Alignment:TTAGTCTK-
-CTGTCTGG

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TTAGTCTK-
VBSYGTCTGG

PB0166.1_Sox12_2/Jaspar

Match Rank:4
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----TTAGTCTK---
ANTCCTTTGTCTNNNN

PAX3:FKHR-fusion(Paired/Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:5
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----TTAGTCTK---
NNAATTAGTCACGGT

PB0032.1_IRC900814_1/Jaspar

Match Rank:6
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----TTAGTCTK----
GNNATTTGTCGTAANN

MA0132.1_Pdx1/Jaspar

Match Rank:7
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--TTAGTCTK
AATTAG----

PH0107.1_Msx2/Jaspar

Match Rank:8
Score:0.57
Offset:-8
Orientation:reverse strand
Alignment:--------TTAGTCTK-
ANCGCTAATTGGTCTNN

PB0060.1_Smad3_1/Jaspar

Match Rank:9
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---TTAGTCTK------
NNTNNTGTCTGGNNTNG

MA0514.1_Sox3/Jaspar

Match Rank:10
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--TTAGTCTK
CCTTTGTTTT