Information for motif19


Reverse Opposite:

p-value:1e-16
log p-value:-3.814e+01
Information Content per bp:1.805
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif8.63%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.61%
Average Position of motif in Targets152.2 +/- 99.6bp
Average Position of motif in Background169.4 +/- 31.2bp
Strand Bias (log2 ratio + to - strand density)1.1
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0109.1_Bbx_2/Jaspar

Match Rank:1
Score:0.78
Offset:-4
Orientation:reverse strand
Alignment:----GTGTTAAC-----
NNNNCTGTTAACNNTNN

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:2
Score:0.77
Offset:-2
Orientation:reverse strand
Alignment:--GTGTTAAC
AGGTGTTAAT

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:3
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--GTGTTAAC
AGGTGTGAAM

Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer

Match Rank:4
Score:0.73
Offset:0
Orientation:forward strand
Alignment:GTGTTAAC
CTGTTTAC

FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer

Match Rank:5
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--GTGTTAAC--
NYYTGTTTACHN

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:6
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-GTGTTAAC---
CNTGTTTACATA

MA0593.1_FOXP2/Jaspar

Match Rank:7
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-GTGTTAAC--
TNTGTTTACTT

MA0047.2_Foxa2/Jaspar

Match Rank:8
Score:0.69
Offset:1
Orientation:forward strand
Alignment:GTGTTAAC-----
-TGTTTACTTAGG

MA0031.1_FOXD1/Jaspar

Match Rank:9
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:GTGTTAAC
ATGTTTAC

PB0013.1_Eomes_1/Jaspar

Match Rank:10
Score:0.68
Offset:-6
Orientation:forward strand
Alignment:------GTGTTAAC---
GAAAAGGTGTGAAAATT