Information for motif2


Reverse Opposite:

p-value:1e-25
log p-value:-5.799e+01
Information Content per bp:1.816
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif11.68%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.45%
Average Position of motif in Targets164.3 +/- 82.3bp
Average Position of motif in Background221.2 +/- 16.9bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

TRa(NR)/C17.2-TRa-ChIP-Seq(GSE38347)/Homer

Match Rank:1
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CAATTGRKGACA
GGTCANYTGAGGWCA

PH0109.1_Nkx1-1/Jaspar

Match Rank:2
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----CAATTGRKGACA
TGCGCTAATTAGTGGGA

PB0041.1_Mafb_1/Jaspar

Match Rank:3
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CAATTGRKGACA----
AAATTTGCTGACTTAGA

PB0173.1_Sox21_2/Jaspar

Match Rank:4
Score:0.59
Offset:-8
Orientation:reverse strand
Alignment:--------CAATTGRKGACA
NNNNNGAACAATTGANN---

PB0150.1_Mybl1_2/Jaspar

Match Rank:5
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----CAATTGRKGACA
CACGGCAGTTGGTNN--

PB0042.1_Mafk_1/Jaspar

Match Rank:6
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CAATTGRKGACA-
TAAAAATGCTGACTT

PH0029.1_En2/Jaspar

Match Rank:7
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----CAATTGRKGACA
TGCACTAATTAGTGGAA

PB0066.1_Sox17_1/Jaspar

Match Rank:8
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----CAATTGRKGACA
ATAAACAATTAAACA--

MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CAATTGRKGACA--
AAAWWTGCTGACWWD

PH0110.1_Nkx1-2/Jaspar

Match Rank:10
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----CAATTGRKGACA
TGNACTAATTAGTGNAN