Information for motif31


Reverse Opposite:

p-value:1e-11
log p-value:-2.731e+01
Information Content per bp:1.666
Number of Target Sequences with motif29.0
Percentage of Target Sequences with motif14.72%
Number of Background Sequences with motif7.5
Percentage of Background Sequences with motif3.12%
Average Position of motif in Targets154.0 +/- 90.4bp
Average Position of motif in Background136.9 +/- 103.0bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0141.1_Pknox2/Jaspar

Match Rank:1
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--GTGGCTGTCA----
AAGCACCTGTCAATAT

MA0498.1_Meis1/Jaspar

Match Rank:2
Score:0.73
Offset:2
Orientation:forward strand
Alignment:GTGGCTGTCA-------
--AGCTGTCACTCACCT

PH0169.1_Tgif1/Jaspar

Match Rank:3
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--GTGGCTGTCA-----
NNNCAGCTGTCAATATN

PH0105.1_Meis3/Jaspar

Match Rank:4
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--GTGGCTGTCA----
AATTACCTGTCAATAC

PH0170.1_Tgif2/Jaspar

Match Rank:5
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--GTGGCTGTCA----
AACTAGCTGTCAATAC

Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:GTGGCTGTCA---
-TGTCTGDCACCT

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:7
Score:0.68
Offset:2
Orientation:forward strand
Alignment:GTGGCTGTCA----
--GSCTGTCACTCA

MA0513.1_SMAD2::SMAD3::SMAD4/Jaspar

Match Rank:8
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GTGGCTGTCA---
CTGTCTGTCACCT

PB0151.1_Myf6_2/Jaspar

Match Rank:9
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---GTGGCTGTCA--
GGNGCGNCTGTTNNN

PH0102.1_Meis1/Jaspar

Match Rank:10
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--GTGGCTGTCA----
AACGAGCTGTCAATAC