Information for motif39


Reverse Opposite:

p-value:1e-10
log p-value:-2.332e+01
Information Content per bp:1.616
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif6.09%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.40%
Average Position of motif in Targets128.3 +/- 81.0bp
Average Position of motif in Background148.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0103.2_ZEB1/Jaspar

Match Rank:1
Score:0.66
Offset:3
Orientation:forward strand
Alignment:GAACCTCACCTC
---CCTCACCTG

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:GAACCTCACCTC
-NNACTTACCTN

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:3
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GAACCTCACCTC
TGACCTTGACCT-

PB0117.1_Eomes_2/Jaspar

Match Rank:4
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GAACCTCACCTC---
NNGGCGACACCTCNNN

MA0595.1_SREBF1/Jaspar

Match Rank:5
Score:0.57
Offset:4
Orientation:forward strand
Alignment:GAACCTCACCTC--
----ATCACCCCAC

MA0512.1_Rxra/Jaspar

Match Rank:6
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:GAACCTCACCTC--
---NCTGACCTTTG

E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:7
Score:0.55
Offset:4
Orientation:forward strand
Alignment:GAACCTCACCTC--
----NNCACCTGNN

MA0079.3_SP1/Jaspar

Match Rank:8
Score:0.55
Offset:2
Orientation:forward strand
Alignment:GAACCTCACCTC-
--GCCCCGCCCCC

PB0118.1_Esrra_2/Jaspar

Match Rank:9
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:GAACCTCACCTC-----
NNNNTTGACCCCTNNNN

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:10
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:GAACCTCACCTC
-----TGACCT-