Information for motif4


Reverse Opposite:

p-value:1e-23
log p-value:-5.455e+01
Information Content per bp:1.771
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif11.17%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.76%
Average Position of motif in Targets150.4 +/- 78.6bp
Average Position of motif in Background152.5 +/- 46.8bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.79
Offset:-1
Orientation:reverse strand
Alignment:-GGAGCAGATG
CGGAGC-----

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.76
Offset:-1
Orientation:reverse strand
Alignment:-GGAGCAGATG
GGGAGGACNG-

PB0003.1_Ascl2_1/Jaspar

Match Rank:3
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--GGAGCAGATG-----
NNNNAGCAGCTGCTGAN

SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:4
Score:0.69
Offset:2
Orientation:forward strand
Alignment:GGAGCAGATG
--ANCAGCTG

MA0499.1_Myod1/Jaspar

Match Rank:5
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-GGAGCAGATG--
NGNGACAGCTGCN

MA0522.1_Tcf3/Jaspar

Match Rank:6
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:GGAGCAGATG--
-NTGCAGCTGTG

MyoD(HLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:7
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:GGAGCAGATG--
NNAGCAGCTGCT

Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer

Match Rank:8
Score:0.66
Offset:0
Orientation:forward strand
Alignment:GGAGCAGATG--
VNAVCAGCTGGC

Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:GGAGCAGATG-
-CAGCAGCTGN

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:10
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:GGAGCAGATG--
--AACAGATGGC