Information for motif40


Reverse Opposite:

p-value:1e-8
log p-value:-2.058e+01
Information Content per bp:1.666
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif5.58%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.73%
Average Position of motif in Targets113.1 +/- 79.8bp
Average Position of motif in Background160.3 +/- 57.9bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0465.1_CDX2/Jaspar

Match Rank:1
Score:0.71
Offset:0
Orientation:forward strand
Alignment:AAGTTATAAA-
AAGCCATAAAA

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:2
Score:0.69
Offset:2
Orientation:forward strand
Alignment:AAGTTATAAA--
--GTCATAAAAN

PH0012.1_Cdx1/Jaspar

Match Rank:3
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--AAGTTATAAA----
TAAGGTAATAAAATTA

PH0047.1_Hoxa11/Jaspar

Match Rank:4
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--AAGTTATAAA----
TAAAGTCGTAAAACAT

PH0066.1_Hoxc11/Jaspar

Match Rank:5
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--AAGTTATAAA----
TAAAGTCGTAAAATAG

PH0065.1_Hoxc10/Jaspar

Match Rank:6
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--AAGTTATAAA----
TAAAGTCGTAAAACGT

PH0013.1_Cdx2/Jaspar

Match Rank:7
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--AAGTTATAAA----
AAAGGTAATAAAATTT

POL012.1_TATA-Box/Jaspar

Match Rank:8
Score:0.65
Offset:3
Orientation:forward strand
Alignment:AAGTTATAAA--------
---GTATAAAAGGCGGGG

MA0108.2_TBP/Jaspar

Match Rank:9
Score:0.65
Offset:3
Orientation:forward strand
Alignment:AAGTTATAAA--------
---GTATAAAAGGCGGGG

PH0073.1_Hoxc9/Jaspar

Match Rank:10
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--AAGTTATAAA----
GGAGGTCATTAATTAT