Information for motif43


Reverse Opposite:

p-value:1e4
log p-value:1.000e+01
Information Content per bp:1.530
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif5.58%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.47%
Average Position of motif in Targets174.5 +/- 89.4bp
Average Position of motif in Background214.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:GATAATGCAAAC
--TTATGCAAAT

MA0507.1_POU2F2/Jaspar

Match Rank:2
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:GATAATGCAAAC---
--ATATGCAAATNNN

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:3
Score:0.65
Offset:0
Orientation:forward strand
Alignment:GATAATGCAAAC
NATGTTGCAA--

Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer

Match Rank:4
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GATAATGCAAAC
-MTGATGCAAT-

Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer

Match Rank:5
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:GATAATGCAAAC
-ATGATGCAAT-

MA0466.1_CEBPB/Jaspar

Match Rank:6
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GATAATGCAAAC
-ATTGTGCAATA

Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:7
Score:0.61
Offset:2
Orientation:forward strand
Alignment:GATAATGCAAAC
--ATATGCAAAT

PH0144.1_Pou2f2/Jaspar

Match Rank:8
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GATAATGCAAAC----
TTGTATGCAAATTAGA

PH0148.1_Pou3f3/Jaspar

Match Rank:9
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--GATAATGCAAAC---
TNNATTATGCATANNTT

PB0019.1_Foxl1_1/Jaspar

Match Rank:10
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GATAATGCAAAC------
-TAAATGTAAACAAAGGT