Information for motif6


Reverse Opposite:

p-value:1e-23
log p-value:-5.455e+01
Information Content per bp:1.664
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif11.17%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.81%
Average Position of motif in Targets170.1 +/- 95.0bp
Average Position of motif in Background195.4 +/- 20.3bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CTTGTCACTCCC
NCTGTCAATCAN

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:2
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CTTGTCACTCCC
GSCTGTCACTCA-

MA0498.1_Meis1/Jaspar

Match Rank:3
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CTTGTCACTCCC--
AGCTGTCACTCACCT

PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:4
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CTTGTCACTCCC-
-GTTTCACTTCCG

PH0140.1_Pknox1/Jaspar

Match Rank:5
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----CTTGTCACTCCC
AAAGACCTGTCAATCC-

PH0141.1_Pknox2/Jaspar

Match Rank:6
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----CTTGTCACTCCC
AAGCACCTGTCAATAT-

PH0105.1_Meis3/Jaspar

Match Rank:7
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----CTTGTCACTCCC
AATTACCTGTCAATAC-

KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer

Match Rank:8
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:CTTGTCACTCCC-
---GCCMCRCCCH

MA0599.1_KLF5/Jaspar

Match Rank:9
Score:0.57
Offset:3
Orientation:forward strand
Alignment:CTTGTCACTCCC-
---GCCCCGCCCC

MA0482.1_Gata4/Jaspar

Match Rank:10
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CTTGTCACTCCC
TCTTATCTCCC--