Information for motif9


Reverse Opposite:

p-value:1e-12
log p-value:-2.920e+01
Information Content per bp:1.530
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif0.21%
Number of Background Sequences with motif3.9
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets577.0 +/- 574.7bp
Average Position of motif in Background344.5 +/- 225.7bp
Strand Bias (log2 ratio + to - strand density)0.9
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:1
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CGATCTATTCTC
DGATCRATAN--

PB0137.1_Irf3_2/Jaspar

Match Rank:2
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CGATCTATTCTC-
NNGCACCTTTCTCC

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529/Homer

Match Rank:3
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:CGATCTATTCTC--
----CTATTTTTGG

PB0138.1_Irf4_2/Jaspar

Match Rank:4
Score:0.57
Offset:3
Orientation:forward strand
Alignment:CGATCTATTCTC------
---AGTATTCTCGGTTGC

PB0139.1_Irf5_2/Jaspar

Match Rank:5
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:CGATCTATTCTC------
---NNAATTCTCGNTNAN

PB0163.1_Six6_2/Jaspar

Match Rank:6
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---CGATCTATTCTC--
ATGGGATATATCCGCCT

PB0074.1_Sox8_1/Jaspar

Match Rank:7
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CGATCTATTCTC-----
GTATCTATTGTTCTTTA

MA0497.1_MEF2C/Jaspar

Match Rank:8
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CGATCTATTCTC-----
--TTCTATTTTTAGNNN

GATA-IR3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:9
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---CGATCTATTCTC-----
NDBAGATRWTATCTVNNNNN

PB0173.1_Sox21_2/Jaspar

Match Rank:10
Score:0.52
Offset:1
Orientation:forward strand
Alignment:CGATCTATTCTC------
-AATCAATTGTTCCGCTA