Information for motif18


Reverse Opposite:

p-value:1e-7
log p-value:-1.677e+01
Information Content per bp:1.805
Number of Target Sequences with motif38.0
Percentage of Target Sequences with motif0.54%
Number of Background Sequences with motif60.6
Percentage of Background Sequences with motif0.20%
Average Position of motif in Targets447.5 +/- 360.7bp
Average Position of motif in Background564.8 +/- 366.6bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.21
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0153.1_Nr2f2_2/Jaspar

Match Rank:1
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-TTGCCGGGTC-----
CGCGCCGGGTCACGTA

PB0157.1_Rara_2/Jaspar

Match Rank:2
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-TTGCCGGGTC-----
AGAGCGGGGTCAAGTA

PH0140.1_Pknox1/Jaspar

Match Rank:3
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---TTGCCGGGTC---
GGATTGACAGGTCNTT

PH0104.1_Meis2/Jaspar

Match Rank:4
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---TTGCCGGGTC---
NTATTGACAGGTNNTN

PB0164.1_Smad3_2/Jaspar

Match Rank:5
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----TTGCCGGGTC---
NAGANTGGCGGGGNGNA

PH0102.1_Meis1/Jaspar

Match Rank:6
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---TTGCCGGGTC---
NTATTGACAGCTNNTT

PH0105.1_Meis3/Jaspar

Match Rank:7
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---TTGCCGGGTC---
GTATTGACAGGTNNTT

PH0141.1_Pknox2/Jaspar

Match Rank:8
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---TTGCCGGGTC---
NNATTGACAGGTGCTT

PB0057.1_Rxra_1/Jaspar

Match Rank:9
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-TTGCCGGGTC------
NTNNNGGGGTCANGNNN

PB0025.1_Glis2_1/Jaspar

Match Rank:10
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--TTGCCGGGTC----
NTNTGGGGGGTCNNNA