Information for motif13


Reverse Opposite:

p-value:1e-10
log p-value:-2.382e+01
Information Content per bp:1.848
Number of Target Sequences with motif51.0
Percentage of Target Sequences with motif0.73%
Number of Background Sequences with motif46.0
Percentage of Background Sequences with motif0.25%
Average Position of motif in Targets387.2 +/- 302.1bp
Average Position of motif in Background504.8 +/- 469.1bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

ETS:E-box/HPC7-Scl-ChIP-Seq(GSE22178)/Homer

Match Rank:1
Score:0.65
Offset:0
Orientation:forward strand
Alignment:AGGAAACTTCAG
AGGAAACAGCTG

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:2
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---AGGAAACTTCAG
NACAGGAAAT-----

MA0105.3_NFKB1/Jaspar

Match Rank:3
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:AGGAAACTTCAG
GGGAAATTCCC-

MA0107.1_RELA/Jaspar

Match Rank:4
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:AGGAAACTTCAG
-GGAAATTCCC-

EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer

Match Rank:5
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---AGGAAACTTCAG
NACAGGAAAT-----

NFkB-p65-Rel(RHD)/LPS-exp(GSE23622)/Homer

Match Rank:6
Score:0.60
Offset:1
Orientation:forward strand
Alignment:AGGAAACTTCAG
-GGAAATTCCC-

MA0101.1_REL/Jaspar

Match Rank:7
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:AGGAAACTTCAG
-GGAAANCCCC-

MA0136.1_ELF5/Jaspar

Match Rank:8
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-AGGAAACTTCAG
AAGGAAGTA----

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:9
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:AGGAAACTTCAG--
--GWAAYHTGABMC

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:10
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-AGGAAACTTCAG
ANGNAAAGGTCA-