Information for motif15


Reverse Opposite:

p-value:1e-9
log p-value:-2.240e+01
Information Content per bp:1.530
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif0.33%
Number of Background Sequences with motif11.7
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets383.0 +/- 294.1bp
Average Position of motif in Background745.3 +/- 482.4bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0143.3_Sox2/Jaspar

Match Rank:1
Score:0.84
Offset:2
Orientation:forward strand
Alignment:TACCTTTGTT
--CCTTTGTT

MA0514.1_Sox3/Jaspar

Match Rank:2
Score:0.82
Offset:2
Orientation:forward strand
Alignment:TACCTTTGTT--
--CCTTTGTTTT

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:3
Score:0.80
Offset:2
Orientation:forward strand
Alignment:TACCTTTGTT
--CCWTTGTY

PB0061.1_Sox11_1/Jaspar

Match Rank:4
Score:0.78
Offset:-2
Orientation:reverse strand
Alignment:--TACCTTTGTT-----
NNNTCCTTTGTTCTNNN

PB0071.1_Sox4_1/Jaspar

Match Rank:5
Score:0.78
Offset:-2
Orientation:reverse strand
Alignment:--TACCTTTGTT-----
TNNTCCTTTGTTCTNNT

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.75
Offset:1
Orientation:forward strand
Alignment:TACCTTTGTT-
-NCCATTGTTC

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:7
Score:0.74
Offset:2
Orientation:forward strand
Alignment:TACCTTTGTT--
--CCATTGTTNY

MA0515.1_Sox6/Jaspar

Match Rank:8
Score:0.74
Offset:2
Orientation:forward strand
Alignment:TACCTTTGTT--
--CCATTGTTTT

MA0442.1_SOX10/Jaspar

Match Rank:9
Score:0.73
Offset:3
Orientation:forward strand
Alignment:TACCTTTGTT
---CTTTGT-

MA0077.1_SOX9/Jaspar

Match Rank:10
Score:0.68
Offset:2
Orientation:forward strand
Alignment:TACCTTTGTT-
--CCATTGTTC