Information for motif17


Reverse Opposite:

p-value:1e-9
log p-value:-2.171e+01
Information Content per bp:1.680
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif0.19%
Number of Background Sequences with motif3.4
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets622.6 +/- 317.6bp
Average Position of motif in Background519.4 +/- 725.3bp
Strand Bias (log2 ratio + to - strand density)3.0
Multiplicity (# of sites on avg that occur together)2.69
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0137.1_Irf3_2/Jaspar

Match Rank:1
Score:0.57
Offset:3
Orientation:forward strand
Alignment:AGTTRAGAWTGG-----
---GGAGAAAGGTGCGA

PB0132.1_Hbp1_2/Jaspar

Match Rank:2
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:AGTTRAGAWTGG-----
NNTNNACAATGGGANNN

PH0111.1_Nkx2-2/Jaspar

Match Rank:3
Score:0.56
Offset:-6
Orientation:forward strand
Alignment:------AGTTRAGAWTGG
ATAACCACTTGAAAATT-

MA0037.2_GATA3/Jaspar

Match Rank:4
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AGTTRAGAWTGG
AGATAAGA----

MA0060.2_NFYA/Jaspar

Match Rank:5
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--AGTTRAGAWTGG----
AGAGTGCTGATTGGTCCA

MA0035.3_Gata1/Jaspar

Match Rank:6
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--AGTTRAGAWTGG
ANAGATAAGAA---

PB0021.1_Gata3_1/Jaspar

Match Rank:7
Score:0.54
Offset:-7
Orientation:forward strand
Alignment:-------AGTTRAGAWTGG---
TTTTTAGAGATAAGAAATAAAG

MA0100.2_Myb/Jaspar

Match Rank:8
Score:0.53
Offset:-4
Orientation:reverse strand
Alignment:----AGTTRAGAWTGG
TGGCAGTTGN------

PB0023.1_Gata6_1/Jaspar

Match Rank:9
Score:0.53
Offset:-5
Orientation:forward strand
Alignment:-----AGTTRAGAWTGG
TATAGAGATAAGAATTG

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:10
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:AGTTRAGAWTGG
AGGTGTTAAT--