Information for motif2


Reverse Opposite:

p-value:1e-14
log p-value:-3.429e+01
Information Content per bp:1.569
Number of Target Sequences with motif27.0
Percentage of Target Sequences with motif0.38%
Number of Background Sequences with motif9.4
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets266.0 +/- 315.8bp
Average Position of motif in Background491.9 +/- 512.7bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax7-long(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:1
Score:0.78
Offset:-1
Orientation:reverse strand
Alignment:-TAATCTGATAAG
GTAATCDGATTA-

Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer

Match Rank:2
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:TAATCTGATAAG
TAATYNRATTAR

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:3
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--TAATCTGATAAG
GCTAATCC------

GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:4
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--TAATCTGATAAG
YSTTATCT------

PB0022.1_Gata5_1/Jaspar

Match Rank:5
Score:0.64
Offset:0
Orientation:forward strand
Alignment:TAATCTGATAAG-----
TAAACTGATAAGAAGAT

Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer

Match Rank:6
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--TAATCTGATAAG
YCTTATCWVN----

PH0126.1_Obox6/Jaspar

Match Rank:7
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---TAATCTGATAAG
CNATAATCCGNTTNT

Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer

Match Rank:8
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---TAATCTGATAAG
NCCTTATCTG-----

Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer

Match Rank:9
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---TAATCTGATAAG
NNCTTATCTN-----

MA0037.2_GATA3/Jaspar

Match Rank:10
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--TAATCTGATAAG
TCTTATCT------