Information for motif21


Reverse Opposite:

p-value:1e-8
log p-value:-1.929e+01
Information Content per bp:1.530
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif0.17%
Number of Background Sequences with motif3.9
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets315.3 +/- 220.3bp
Average Position of motif in Background583.5 +/- 265.3bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0148.1_Pou3f3/Jaspar

Match Rank:1
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:ACTCTTATGC-------
TNNATTATGCATANNTT

MA0063.1_Nkx2-5/Jaspar

Match Rank:2
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:ACTCTTATGC
-CAATTAA--

PB0145.1_Mafb_2/Jaspar

Match Rank:3
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:ACTCTTATGC-----
ANATTTTTGCAANTN

MA0142.1_Pou5f1::Sox2/Jaspar

Match Rank:4
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-ACTCTTATGC----
CTTTGTTATGCAAAT

PB0023.1_Gata6_1/Jaspar

Match Rank:5
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--ACTCTTATGC-----
NNANTCTTATCTNNNNN

PB0141.1_Isgf3g_2/Jaspar

Match Rank:6
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----ACTCTTATGC
NNGTANTGTTTTNC

OCT4-SOX2-TCF-NANOG((POU/Homeobox/HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-ACTCTTATGC----
CATTGTTATGCAAAT

PB0021.1_Gata3_1/Jaspar

Match Rank:8
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----ACTCTTATGC-------
NNTNANTTCTTATCTCTANANN

Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:ACTCTTATGC----
----TTATGCAAAT

PH0145.1_Pou2f3/Jaspar

Match Rank:10
Score:0.54
Offset:2
Orientation:forward strand
Alignment:ACTCTTATGC--------
--TTGTATGCAAATTAGA