Information for motif22


Reverse Opposite:

p-value:1e-8
log p-value:-1.918e+01
Information Content per bp:1.696
Number of Target Sequences with motif223.0
Percentage of Target Sequences with motif3.18%
Number of Background Sequences with motif384.2
Percentage of Background Sequences with motif2.12%
Average Position of motif in Targets384.5 +/- 340.3bp
Average Position of motif in Background453.0 +/- 401.5bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0207.1_Zic3_2/Jaspar

Match Rank:1
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--ACWCATCGGG---
GAGCACAGCAGGACA

PB0205.1_Zic1_2/Jaspar

Match Rank:2
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--ACWCATCGGG---
CCACACAGCAGGAGA

PB0206.1_Zic2_2/Jaspar

Match Rank:3
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--ACWCATCGGG---
CCACACAGCAGGAGA

Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.66
Offset:1
Orientation:forward strand
Alignment:ACWCATCGGG---
-CACAGCAGGGGG

PB0168.1_Sox14_2/Jaspar

Match Rank:5
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---ACWCATCGGG--
CTCACACAATGGCGC

PB0132.1_Hbp1_2/Jaspar

Match Rank:6
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---ACWCATCGGG----
NNTNNACAATGGGANNN

MA0058.2_MAX/Jaspar

Match Rank:7
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--ACWCATCGGG
AAGCACATGG--

PB0128.1_Gcm1_2/Jaspar

Match Rank:8
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-ACWCATCGGG------
TGCGCATAGGGGAGGAG

MA0099.2_JUN::FOS/Jaspar

Match Rank:9
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--ACWCATCGGG
TGACTCA-----

MA0147.2_Myc/Jaspar

Match Rank:10
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--ACWCATCGGG
AAGCACATGG--