Information for motif25


Reverse Opposite:

p-value:1e-7
log p-value:-1.627e+01
Information Content per bp:1.510
Number of Target Sequences with motif43.0
Percentage of Target Sequences with motif0.61%
Number of Background Sequences with motif44.7
Percentage of Background Sequences with motif0.25%
Average Position of motif in Targets489.0 +/- 429.4bp
Average Position of motif in Background492.7 +/- 376.2bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0526.1_USF2/Jaspar

Match Rank:1
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GTCACCGGGCTG
GGTCACATGAC--

MA0093.2_USF1/Jaspar

Match Rank:2
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GTCACCGGGCTG
GGTCACGTGGC--

NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer

Match Rank:3
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GTCACCGGGCTG
GTCACGTGGM--

POL010.1_DCE_S_III/Jaspar

Match Rank:4
Score:0.61
Offset:7
Orientation:reverse strand
Alignment:GTCACCGGGCTG
-------NGCTN

Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer

Match Rank:5
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GTCACCGGGCTG
GTCACGTGGT--

POL009.1_DCE_S_II/Jaspar

Match Rank:6
Score:0.56
Offset:8
Orientation:forward strand
Alignment:GTCACCGGGCTG--
--------GCTGTG

PB0191.1_Tcfap2c_2/Jaspar

Match Rank:7
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GTCACCGGGCTG
CCGCCCAAGGGCAG

PB0147.1_Max_2/Jaspar

Match Rank:8
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GTCACCGGGCTG
GTGCCACGCGACTG

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:9
Score:0.55
Offset:5
Orientation:forward strand
Alignment:GTCACCGGGCTG-
-----TWGTCTGV

MA0074.1_RXRA::VDR/Jaspar

Match Rank:10
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GTCACCGGGCTG-
GGGTCAACGAGTTCA