| p-value: | 1e-6 |
| log p-value: | -1.448e+01 |
| Information Content per bp: | 1.647 |
| Number of Target Sequences with motif | 387.0 |
| Percentage of Target Sequences with motif | 5.52% |
| Number of Background Sequences with motif | 777.4 |
| Percentage of Background Sequences with motif | 4.28% |
| Average Position of motif in Targets | 407.1 +/- 376.0bp |
| Average Position of motif in Background | 450.7 +/- 444.7bp |
| Strand Bias (log2 ratio + to - strand density) | 0.0 |
| Multiplicity (# of sites on avg that occur together) | 1.04 |
| Motif File: | file (matrix)
reverse opposite |
| PDF Format Logos: | forward logo
reverse opposite |
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer
| Match Rank: | 1 |
| Score: | 0.63
| | Offset: | -1
| | Orientation: | reverse strand |
| Alignment: | -TGATAGAGTA-
ATGATKGATGRC |
|
|
|
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer
| Match Rank: | 2 |
| Score: | 0.61
| | Offset: | 0
| | Orientation: | reverse strand |
| Alignment: | TGATAGAGTA
TGATTGATGA |
|
|
|
PH0026.1_Duxbl/Jaspar
| Match Rank: | 3 |
| Score: | 0.59
| | Offset: | -6
| | Orientation: | reverse strand |
| Alignment: | ------TGATAGAGTA-
NNNNGTTGATTGGGTCG |
|
|
|
MA0070.1_PBX1/Jaspar
| Match Rank: | 4 |
| Score: | 0.58
| | Offset: | -2
| | Orientation: | reverse strand |
| Alignment: | --TGATAGAGTA
TTTGATTGATGN |
|
|
|
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer
| Match Rank: | 5 |
| Score: | 0.55
| | Offset: | 0
| | Orientation: | forward strand |
| Alignment: | TGATAGAGTA
AGATAASR-- |
|
|
|
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer
| Match Rank: | 6 |
| Score: | 0.54
| | Offset: | 0
| | Orientation: | forward strand |
| Alignment: | TGATAGAGTA--
TGATTRATGGCY |
|
|
|
MA0032.1_FOXC1/Jaspar
| Match Rank: | 7 |
| Score: | 0.54
| | Offset: | 2
| | Orientation: | forward strand |
| Alignment: | TGATAGAGTA
--GGTAAGTA |
|
|
|
PH0161.1_Six1/Jaspar
| Match Rank: | 8 |
| Score: | 0.54
| | Offset: | -5
| | Orientation: | reverse strand |
| Alignment: | -----TGATAGAGTA--
ANNNATGATACCCCATC |
|
|
|
PH0163.1_Six3/Jaspar
| Match Rank: | 9 |
| Score: | 0.54
| | Offset: | -5
| | Orientation: | reverse strand |
| Alignment: | -----TGATAGAGTA--
ANANGTGATACCCTATN |
|
|
|
Pax7(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer
| Match Rank: | 10 |
| Score: | 0.54
| | Offset: | 0
| | Orientation: | reverse strand |
| Alignment: | TGATAGAGTA
TAATTGATTA |
|
|
|
