Information for motif29


Reverse Opposite:

p-value:1e-6
log p-value:-1.413e+01
Information Content per bp:1.530
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif0.16%
Number of Background Sequences with motif4.5
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets463.7 +/- 488.9bp
Average Position of motif in Background197.0 +/- 134.2bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0119.1_Foxa2_2/Jaspar

Match Rank:1
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--ACCTAACAAG---
AAAAATAACAAACGG

PB0121.1_Foxj3_2/Jaspar

Match Rank:2
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----ACCTAACAAG---
AACACCAAAACAAAGGA

MF0011.1_HMG_class/Jaspar

Match Rank:3
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:ACCTAACAAG
----AACAAT

MA0087.1_Sox5/Jaspar

Match Rank:4
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:ACCTAACAAG
---NAACAAT

PH0040.1_Hmbox1/Jaspar

Match Rank:5
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--ACCTAACAAG-----
GANGTTAACTAGTTTNN

PB0172.1_Sox1_2/Jaspar

Match Rank:6
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:ACCTAACAAG-----
NNNTAACAATTATAN

MA0083.2_SRF/Jaspar

Match Rank:7
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----ACCTAACAAG----
CATGCCCAAATAAGGCAA

PB0093.1_Zfp105_1/Jaspar

Match Rank:8
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---ACCTAACAAG--
AACAAACAACAAGAG

MA0084.1_SRY/Jaspar

Match Rank:9
Score:0.58
Offset:1
Orientation:forward strand
Alignment:ACCTAACAAG
-GTAAACAAT

PB0123.1_Foxl1_2/Jaspar

Match Rank:10
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---ACCTAACAAG---
ATATCAAAACAAAACA