Information for motif3


Reverse Opposite:

p-value:1e-14
log p-value:-3.426e+01
Information Content per bp:1.845
Number of Target Sequences with motif47.0
Percentage of Target Sequences with motif0.67%
Number of Background Sequences with motif29.2
Percentage of Background Sequences with motif0.16%
Average Position of motif in Targets340.0 +/- 301.7bp
Average Position of motif in Background740.7 +/- 613.8bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.59
Offset:6
Orientation:forward strand
Alignment:GATATTCTGTCT--
------CTGTCTGG

PB0060.1_Smad3_1/Jaspar

Match Rank:2
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:GATATTCTGTCT-------
--NNTNNTGTCTGGNNTNG

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:3
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GATATTCTGTCT
-ATTTCCTGTN-

EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer

Match Rank:4
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:GATATTCTGTCT
-ATTTCCTGTN-

PB0041.1_Mafb_1/Jaspar

Match Rank:5
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GATATTCTGTCT----
AAATTTGCTGACTTAGA

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:6
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GATATTCTGTCT
AAGATATCCTT---

PB0042.1_Mafk_1/Jaspar

Match Rank:7
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GATATTCTGTCT-
TAAAAATGCTGACTT

Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer

Match Rank:8
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:GATATTCTGTCT
-ACTTCCTGTT-

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:9
Score:0.54
Offset:6
Orientation:forward strand
Alignment:GATATTCTGTCT--
------TWGTCTGV

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.53
Offset:4
Orientation:forward strand
Alignment:GATATTCTGTCT--
----VBSYGTCTGG