Information for motif31


Reverse Opposite:

p-value:1e-5
log p-value:-1.377e+01
Information Content per bp:1.530
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif0.19%
Number of Background Sequences with motif6.6
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets457.8 +/- 367.4bp
Average Position of motif in Background777.0 +/- 369.7bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:1
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--GTACAGTCTG---
VAGRACAKNCTGTBC

MA0007.2_AR/Jaspar

Match Rank:2
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--GTACAGTCTG---
AAGAACAGAATGTTC

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.68
Offset:3
Orientation:forward strand
Alignment:GTACAGTCTG-
---CTGTCTGG

MA0113.2_NR3C1/Jaspar

Match Rank:4
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-GTACAGTCTG----
AGNACATTNTGTTCT

GRE/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--GTACAGTCTG---
VAGRACAKWCTGTYC

ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:6
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--GTACAGTCTG----
NAGAACAGNCTGTNCT

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.65
Offset:3
Orientation:forward strand
Alignment:GTACAGTCTG-
---TWGTCTGV

GRE(NR/IR3)/A549-GR-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GTACAGTCTG-----
AGNACANNNTGTNCTN

PB0060.1_Smad3_1/Jaspar

Match Rank:9
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GTACAGTCTG------
NNTNNTGTCTGGNNTNG

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GTACAGTCTG-
-VBSYGTCTGG