Information for motif34


Reverse Opposite:

p-value:1e-5
log p-value:-1.215e+01
Information Content per bp:1.530
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif0.14%
Number of Background Sequences with motif4.3
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets219.5 +/- 174.1bp
Average Position of motif in Background797.0 +/- 337.5bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0500.1_Myog/Jaspar

Match Rank:1
Score:0.72
Offset:-3
Orientation:reverse strand
Alignment:---CAGCTGCCCAGC
NNGCAGCTGTC----

MA0522.1_Tcf3/Jaspar

Match Rank:2
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--CAGCTGCCCAGC
CACAGCTGCAG---

E2A(HLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer

Match Rank:3
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---CAGCTGCCCAGC
NNACAGCTGC-----

MyoD(HLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:4
Score:0.70
Offset:-4
Orientation:reverse strand
Alignment:----CAGCTGCCCAGC
NNAGCAGCTGCT----

Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---CAGCTGCCCAGC
CAGCAGCTGN-----

MA0521.1_Tcf12/Jaspar

Match Rank:6
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---CAGCTGCCCAGC
NNGCAGCTGTT----

PB0003.1_Ascl2_1/Jaspar

Match Rank:7
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----CAGCTGCCCAGC
CTCAGCAGCTGCTACTG

MA0499.1_Myod1/Jaspar

Match Rank:8
Score:0.68
Offset:-5
Orientation:reverse strand
Alignment:-----CAGCTGCCCAGC
NGNGACAGCTGCN----

SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:9
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:CAGCTGCCCAGC
CAGCTGNT----

Ptf1a(HLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer

Match Rank:10
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CAGCTGCCCAGC
ACAGCTGTTN---