Information for motif39


Reverse Opposite:

p-value:1e-3
log p-value:-8.986e+00
Information Content per bp:1.889
Number of Target Sequences with motif728.0
Percentage of Target Sequences with motif10.38%
Number of Background Sequences with motif1650.3
Percentage of Background Sequences with motif9.09%
Average Position of motif in Targets400.5 +/- 365.7bp
Average Position of motif in Background451.7 +/- 462.6bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.90
Offset:0
Orientation:reverse strand
Alignment:AAGCATAT---
AAGGATATNTN

MA0033.1_FOXL1/Jaspar

Match Rank:2
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-AAGCATAT
TATACATA-

PH0148.1_Pou3f3/Jaspar

Match Rank:3
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----AAGCATAT----
AAAATATGCATAATAAA

MA0507.1_POU2F2/Jaspar

Match Rank:4
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--AAGCATAT---
ATATGCAAATNNN

Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer

Match Rank:5
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:AAGCATAT---
-AACAKATGGY

MA0136.1_ELF5/Jaspar

Match Rank:6
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:AAGCATAT-
AAGGAAGTA

MA0058.2_MAX/Jaspar

Match Rank:7
Score:0.61
Offset:0
Orientation:forward strand
Alignment:AAGCATAT--
AAGCACATGG

PB0181.1_Spdef_2/Jaspar

Match Rank:8
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----AAGCATAT----
CTACTAGGATGTNNTN

MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----AAGCATAT--
HWWGTCAGCAWWTTT

MA0164.1_Nr2e3/Jaspar

Match Rank:10
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AAGCATAT
CAAGCTT--