Information for motif40


Reverse Opposite:

p-value:1e-3
log p-value:-8.785e+00
Information Content per bp:1.966
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif0.14%
Number of Background Sequences with motif6.5
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets708.9 +/- 359.5bp
Average Position of motif in Background388.7 +/- 308.1bp
Strand Bias (log2 ratio + to - strand density)3.2
Multiplicity (# of sites on avg that occur together)3.10
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0091.1_Zbtb3_1/Jaspar

Match Rank:1
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TCAGTGCAGTTA----
NNNANTGCAGTGCNNTT

BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer

Match Rank:2
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:TCAGTGCAGTTA-
---BRRCVGTTDN

MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer

Match Rank:3
Score:0.60
Offset:4
Orientation:forward strand
Alignment:TCAGTGCAGTTA
----GGCVGTTR

PB0150.1_Mybl1_2/Jaspar

Match Rank:4
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:TCAGTGCAGTTA----
-CACGGCAGTTGGTNN

MA0122.1_Nkx3-2/Jaspar

Match Rank:5
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-TCAGTGCAGTTA
TTAAGTGGA----

AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer

Match Rank:6
Score:0.56
Offset:3
Orientation:forward strand
Alignment:TCAGTGCAGTTA-
---TGGCAGTTGG

PB0005.1_Bbx_1/Jaspar

Match Rank:7
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----TCAGTGCAGTTA
TAATTCAATGAAGTG-

PB0149.1_Myb_2/Jaspar

Match Rank:8
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:TCAGTGCAGTTA----
NNNTGGCAGTTGGTNN

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:9
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:TCAGTGCAGTTA-
-----BCMATTAG

PB0146.1_Mafk_2/Jaspar

Match Rank:10
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:TCAGTGCAGTTA----
-CCTTGCAATTTTTNN