Information for motif42


Reverse Opposite:

p-value:1e-3
log p-value:-8.599e+00
Information Content per bp:1.530
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif0.13%
Number of Background Sequences with motif5.8
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets238.2 +/- 136.8bp
Average Position of motif in Background546.2 +/- 387.0bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0051.1_Osr2_1/Jaspar

Match Rank:1
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----CCTACTATAC--
CNNNGCTACTGTANNN

PB0050.1_Osr1_1/Jaspar

Match Rank:2
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----CCTACTATAC--
TNNTGCTACTGTNNNN

PB0106.1_Arid5a_2/Jaspar

Match Rank:3
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CCTACTATAC-------
CATACAATACGAAATAA

MA0108.2_TBP/Jaspar

Match Rank:4
Score:0.54
Offset:-5
Orientation:reverse strand
Alignment:-----CCTACTATAC
NNNNNNCTTTTATAN

POL012.1_TATA-Box/Jaspar

Match Rank:5
Score:0.53
Offset:-5
Orientation:reverse strand
Alignment:-----CCTACTATAC
NNNNNNCTTTTATAN

MA0032.1_FOXC1/Jaspar

Match Rank:6
Score:0.53
Offset:7
Orientation:reverse strand
Alignment:CCTACTATAC-----
-------TACTNNNN

PB0174.1_Sox30_2/Jaspar

Match Rank:7
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-CCTACTATAC-----
NCGTATTATAATCNTA

TATA-Box(TBP)/Promoter/Homer

Match Rank:8
Score:0.52
Offset:0
Orientation:forward strand
Alignment:CCTACTATAC--
CCTTTTATAGNC

PB0181.1_Spdef_2/Jaspar

Match Rank:9
Score:0.51
Offset:-8
Orientation:forward strand
Alignment:--------CCTACTATAC
GATAACATCCTAGTAG--

PB0128.1_Gcm1_2/Jaspar

Match Rank:10
Score:0.49
Offset:-4
Orientation:reverse strand
Alignment:----CCTACTATAC---
NTCNTCCCCTATNNGNN