Information for motif43


Reverse Opposite:

p-value:1e-3
log p-value:-8.498e+00
Information Content per bp:1.934
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.10%
Number of Background Sequences with motif3.6
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets284.2 +/- 225.6bp
Average Position of motif in Background760.1 +/- 406.0bp
Strand Bias (log2 ratio + to - strand density)3.0
Multiplicity (# of sites on avg that occur together)2.57
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer

Match Rank:1
Score:0.66
Offset:0
Orientation:forward strand
Alignment:TGTACCCCGGGA
NGTCCCNNGGGA

MA0154.2_EBF1/Jaspar

Match Rank:2
Score:0.62
Offset:1
Orientation:forward strand
Alignment:TGTACCCCGGGA
-GTCCCCAGGGA

EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer

Match Rank:3
Score:0.61
Offset:1
Orientation:forward strand
Alignment:TGTACCCCGGGA-
-GTCCCCAGGGGA

PB0156.1_Plagl1_2/Jaspar

Match Rank:4
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----TGTACCCCGGGA-
NNNNGGTACCCCCCANN

PB0159.1_Rfx4_2/Jaspar

Match Rank:5
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--TGTACCCCGGGA-
NNNGTAACTANGNNA

PB0030.1_Hnf4a_1/Jaspar

Match Rank:6
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----TGTACCCCGGGA-
NNANTTGACCCCTNNNN

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:7
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-TGTACCCCGGGA
CTGTTCCTGG---

PB0102.1_Zic2_1/Jaspar

Match Rank:8
Score:0.54
Offset:1
Orientation:forward strand
Alignment:TGTACCCCGGGA----
-CCCCCCCGGGGGGGT

MA0510.1_RFX5/Jaspar

Match Rank:9
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--TGTACCCCGGGA-
NCTGTTGCCAGGGAG

PB0204.1_Zfp740_2/Jaspar

Match Rank:10
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--TGTACCCCGGGA---
AAATTCCCCCCGGAAGT