Information for motif5


Reverse Opposite:

p-value:1e-13
log p-value:-3.003e+01
Information Content per bp:1.873
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif0.26%
Number of Background Sequences with motif4.3
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets482.2 +/- 423.0bp
Average Position of motif in Background567.9 +/- 171.3bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer

Match Rank:1
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----AGAAATTTCTAC
TTCTAGAABNTTCTA-

HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----AGAAATTTCTAC----
TTCTAGAANNTTCCAGAANN

MA0486.1_HSF1/Jaspar

Match Rank:3
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----AGAAATTTCTAC
CTTCTAGAAGGTTCT--

PB0126.1_Gata5_2/Jaspar

Match Rank:4
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----AGAAATTTCTAC-
NNNCTGATATCTCNNNN

PH0062.1_Hoxb7/Jaspar

Match Rank:5
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----AGAAATTTCTAC
TNNCATTAATTANTNC

NFkB-p65-Rel(RHD)/LPS-exp(GSE23622)/Homer

Match Rank:6
Score:0.55
Offset:0
Orientation:forward strand
Alignment:AGAAATTTCTAC
GGAAATTCCC--

PH0007.1_Barx1/Jaspar

Match Rank:7
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--AGAAATTTCTAC--
AAAGTAATTAGTGAAT

MA0158.1_HOXA5/Jaspar

Match Rank:8
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-AGAAATTTCTAC
CACTAATT-----

PH0055.1_Hoxa7_2/Jaspar

Match Rank:9
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----AGAAATTTCTAC
TNCCATTAATTACTNC

TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--AGAAATTTCTAC
NCTGGAATGC----