Information for motif6


Reverse Opposite:

p-value:1e-12
log p-value:-2.903e+01
Information Content per bp:1.846
Number of Target Sequences with motif57.0
Percentage of Target Sequences with motif0.81%
Number of Background Sequences with motif47.0
Percentage of Background Sequences with motif0.26%
Average Position of motif in Targets366.8 +/- 340.0bp
Average Position of motif in Background464.4 +/- 282.0bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL009.1_DCE_S_II/Jaspar

Match Rank:1
Score:0.60
Offset:7
Orientation:reverse strand
Alignment:TCACAGTCACAG-
-------CACAGN

MA0498.1_Meis1/Jaspar

Match Rank:2
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-TCACAGTCACAG--
NNNTGAGTGACAGCT

MA0592.1_ESRRA/Jaspar

Match Rank:3
Score:0.57
Offset:0
Orientation:forward strand
Alignment:TCACAGTCACAG
CCAAGGTCACA-

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:4
Score:0.56
Offset:2
Orientation:forward strand
Alignment:TCACAGTCACAG
--CCAGGAACAG

PB0195.1_Zbtb3_2/Jaspar

Match Rank:5
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---TCACAGTCACAG-
CAATCACTGGCAGAAT

MA0483.1_Gfi1b/Jaspar

Match Rank:6
Score:0.56
Offset:3
Orientation:forward strand
Alignment:TCACAGTCACAG--
---AAATCACAGCA

MA0510.1_RFX5/Jaspar

Match Rank:7
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--TCACAGTCACAG-
CTCCCTGGCAACAGC

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.55
Offset:0
Orientation:forward strand
Alignment:TCACAGTCACAG
SCCTAGCAACAG

PH0169.1_Tgif1/Jaspar

Match Rank:9
Score:0.54
Offset:1
Orientation:forward strand
Alignment:TCACAGTCACAG------
-GATATTGACAGCTGCGT

MA0067.1_Pax2/Jaspar

Match Rank:10
Score:0.54
Offset:4
Orientation:forward strand
Alignment:TCACAGTCACAG
----AGTCACGC